Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   A6J54_RS11995 Genome accession   NZ_CP020402
Coordinates   2019699..2020502 (+) Length   267 a.a.
NCBI ID   WP_002217677.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 2014699..2025502
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS11970 (A6J54_11580) lptE 2015607..2016086 (-) 480 WP_002214127.1 LPS assembly lipoprotein LptE -
  A6J54_RS11975 (A6J54_11585) pgeF 2016138..2016917 (-) 780 WP_002233699.1 peptidoglycan editing factor PgeF -
  A6J54_RS15515 - 2017084..2017257 (+) 174 Protein_1950 IS5/IS1182 family transposase -
  A6J54_RS11985 (A6J54_11595) - 2017476..2018423 (+) 948 WP_002229204.1 bile acid:sodium symporter family protein -
  A6J54_RS11990 (A6J54_11600) rluD 2018576..2019700 (-) 1125 WP_080542307.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  A6J54_RS11995 (A6J54_11605) comL 2019699..2020502 (+) 804 WP_002217677.1 outer membrane protein assembly factor BamD Machinery gene
  A6J54_RS12000 (A6J54_11610) comA 2020560..2022779 (-) 2220 WP_172595951.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  A6J54_RS15520 - 2022861..2023052 (+) 192 Protein_1955 hypothetical protein -
  A6J54_RS12005 (A6J54_11620) - 2023274..2024326 (+) 1053 WP_080542308.1 IS5 family transposase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 30790.80 Da        Isoelectric Point: 8.9351

>NTDB_id=222231 A6J54_RS11995 WP_002217677.1 2019699..2020502(+) (comL) [Neisseria meningitidis strain FDAARGOS_215]
MKKILLTVSLGLALSACATQGTVDKDAQITQDWSVEKLYAEAQDELNSSNYTRAVKLYEILESRFPTSRHARQSQLDTAY
AYYKDDEKDKALAAIERFRRLHPQHPNMDYALYLRGLVLFNEDQSFLNKLASQDWSDRDPKANREAYQAFAELVQRFPNS
KYAADATARMVKLVDALGGNEISVARYYMKRGAYIAAANRAQKIIGSYQNTRYVEESLAILELAYQKLGKPQLAADTRRV
LETNFPKSPFLTHAWQPDDMPWWRYWH

Nucleotide


Download         Length: 804 bp        

>NTDB_id=222231 A6J54_RS11995 WP_002217677.1 2019699..2020502(+) (comL) [Neisseria meningitidis strain FDAARGOS_215]
ATGAAAAAAATTCTTTTAACGGTTTCATTAGGTTTGGCACTGAGTGCCTGTGCCACTCAAGGTACGGTCGATAAAGATGC
TCAGATTACCCAAGATTGGAGTGTGGAGAAGCTCTATGCCGAAGCCCAGGACGAATTGAACAGCAGCAATTATACGCGGG
CTGTCAAGTTATACGAAATCTTGGAATCGCGCTTCCCCACCAGCCGCCATGCCCGGCAATCCCAACTGGATACCGCATAC
GCCTATTATAAAGACGATGAAAAAGACAAGGCTCTGGCGGCAATCGAACGCTTCCGCCGCCTCCATCCGCAGCATCCGAA
TATGGATTACGCGCTGTATCTGCGCGGCTTGGTGCTGTTCAACGAAGACCAGTCCTTCTTGAACAAACTGGCCTCGCAAG
ACTGGTCCGACCGCGACCCGAAAGCCAACCGCGAAGCGTACCAGGCGTTTGCGGAACTCGTCCAACGCTTCCCGAACAGC
AAATACGCCGCCGATGCAACCGCACGCATGGTCAAACTGGTCGATGCACTGGGCGGCAATGAAATATCGGTGGCGCGCTA
CTACATGAAACGCGGTGCATACATCGCCGCCGCCAACCGCGCCCAAAAAATCATCGGCAGCTACCAGAATACGCGTTATG
TCGAAGAATCGCTCGCCATATTGGAACTTGCCTACCAAAAACTCGGCAAACCACAGCTTGCCGCCGATACGCGCCGCGTG
TTGGAAACCAACTTCCCGAAAAGCCCGTTTTTGACGCACGCTTGGCAGCCCGACGATATGCCCTGGTGGCGTTACTGGCA
TTAA

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(34-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria gonorrhoeae MS11

98.127

100

0.981
  comL Neisseria meningitidis MC58

95.88

100

0.959

Multiple sequence alignment