Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   A6J54_RS11535 Genome accession   NZ_CP020402
Coordinates   1947647..1949026 (-) Length   459 a.a.
NCBI ID   WP_080542289.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1942647..1954026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS11515 (A6J54_11120) recB 1942755..1946369 (+) 3615 WP_080542288.1 exodeoxyribonuclease V subunit beta Machinery gene
  A6J54_RS11520 (A6J54_11125) - 1946408..1946767 (+) 360 WP_002219522.1 rhodanese-like domain-containing protein -
  A6J54_RS11525 (A6J54_11130) - 1946892..1947371 (+) 480 WP_002239618.1 DUF302 domain-containing protein -
  A6J54_RS11535 (A6J54_11140) radA 1947647..1949026 (-) 1380 WP_080542289.1 DNA repair protein RadA Machinery gene
  A6J54_RS11540 (A6J54_11145) hemE 1949215..1950279 (-) 1065 WP_080542290.1 uroporphyrinogen decarboxylase -
  A6J54_RS11545 (A6J54_11150) - 1950354..1951571 (-) 1218 WP_002213996.1 heme biosynthesis protein HemY -
  A6J54_RS11550 (A6J54_11155) - 1951568..1952902 (-) 1335 WP_172595932.1 uroporphyrinogen-III C-methyltransferase -
  A6J54_RS11555 (A6J54_11160) - 1952914..1953678 (-) 765 WP_172595933.1 uroporphyrinogen-III synthase -

Sequence

Protein


Download         Length: 459 a.a.        Molecular weight: 49563.06 Da        Isoelectric Point: 7.3292

>NTDB_id=222229 A6J54_RS11535 WP_080542289.1 1947647..1949026(-) (radA) [Neisseria meningitidis strain FDAARGOS_215]
MAKTLKTLYQCTECGGTSPKWQGKCPHCGEWNTLQESLAAPEPKNARFQSWAADTSTVQSLSSVTATEVPRNPTGMGELD
RVLGGGLVDGAVILLGGDPGIGKSTLLLQTIAKMAQSRKVLYVSGEESAQQVALRAQRLELPTDGVNLLAEIRMEAIQAA
LKQHQPEVVVIDSIQTMYSDQITSAPGSVSQVRECAAQLTRMAKQMGIAMILVGHVTKDGAIAGPRVLEHMVDTVLYFEG
DQHSNYRMIRAIKNRFGAANELGVFAMTENGLKGVSNPSAIFLASYRDDTPGSCVLVTQEGSRPLLVEIQALVDDAHGFT
PKRLTVGLEQNRLAMLLAVLNRHGGIACFDQDVFLNAVGGVKIGEPAADLAVILAMLSSFRNRPMPEKTVVFGEIGLSGE
VRPIARGQERLKEAEKLGFKRAIVPKANMPRNAKEFPNLKIYGVSSLQEAIDICRDSRE

Nucleotide


Download         Length: 1380 bp        

>NTDB_id=222229 A6J54_RS11535 WP_080542289.1 1947647..1949026(-) (radA) [Neisseria meningitidis strain FDAARGOS_215]
ATGGCAAAAACGCTTAAAACCCTTTACCAATGCACCGAATGCGGCGGCACTTCCCCGAAATGGCAGGGCAAATGCCCGCA
TTGCGGCGAGTGGAACACACTTCAGGAAAGCTTGGCCGCGCCCGAGCCGAAAAACGCCCGCTTCCAATCTTGGGCGGCGG
ACACCTCGACCGTCCAATCCCTCTCCTCCGTGACCGCCACCGAAGTGCCGCGCAATCCGACCGGCATGGGCGAACTCGAC
CGCGTATTGGGCGGCGGTTTGGTCGATGGTGCGGTCATCCTGCTCGGCGGCGACCCCGGCATCGGCAAATCCACGCTGCT
GTTGCAAACCATCGCCAAAATGGCGCAAAGCCGTAAAGTGCTATACGTTTCCGGCGAAGAATCCGCCCAACAAGTCGCCC
TGCGCGCGCAGCGTTTGGAACTGCCGACCGACGGCGTAAACCTTCTTGCCGAAATCCGCATGGAAGCGATTCAGGCGGCC
TTGAAACAGCATCAGCCCGAAGTTGTCGTCATCGACTCTATCCAAACCATGTATTCCGACCAAATCACGTCCGCCCCCGG
CTCCGTGTCGCAGGTGCGCGAGTGTGCCGCCCAACTGACGCGCATGGCGAAACAGATGGGCATCGCCATGATACTGGTCG
GACACGTGACCAAAGACGGCGCGATTGCCGGCCCGCGCGTGCTGGAACACATGGTTGATACCGTGCTGTATTTCGAGGGC
GACCAACATTCCAACTACCGCATGATACGCGCCATCAAAAACCGTTTCGGCGCGGCAAACGAATTGGGCGTGTTTGCCAT
GACCGAAAACGGTTTAAAAGGCGTGTCCAACCCGTCCGCCATTTTCCTCGCCAGCTACCGCGACGACACGCCCGGCTCGT
GCGTTTTGGTTACACAGGAAGGCAGCCGCCCGCTTTTGGTCGAAATTCAGGCATTGGTCGATGACGCGCACGGCTTCACG
CCCAAACGCCTCACCGTCGGACTGGAACAAAACCGCCTCGCGATGCTGCTCGCCGTGTTAAACCGCCACGGCGGCATCGC
CTGTTTCGATCAGGATGTTTTTTTAAACGCCGTCGGCGGCGTGAAAATCGGCGAACCGGCGGCGGATTTGGCGGTTATCC
TCGCGATGCTCTCCAGCTTCCGCAACCGCCCGATGCCTGAAAAAACCGTGGTTTTCGGCGAAATCGGTTTGAGCGGCGAA
GTCCGTCCCATCGCACGCGGACAAGAGCGGCTCAAAGAAGCGGAAAAGCTCGGCTTTAAACGCGCCATCGTTCCCAAAGC
CAATATGCCGCGCAATGCCAAAGAGTTTCCGAACCTGAAAATCTACGGCGTTTCGAGTTTGCAGGAAGCCATCGATATTT
GCCGCGACAGCAGGGAATAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-428)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(80-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

50.11

99.129

0.497
  radA Streptococcus pneumoniae Rx1

47.345

98.475

0.466
  radA Streptococcus pneumoniae D39

47.345

98.475

0.466
  radA Streptococcus pneumoniae R6

47.345

98.475

0.466
  radA Streptococcus pneumoniae TIGR4

47.345

98.475

0.466
  radA Streptococcus mitis SK321

47.228

98.257

0.464
  radA Streptococcus mitis NCTC 12261

47.228

98.257

0.464

Multiple sequence alignment