Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   A6J54_RS10860 Genome accession   NZ_CP020402
Coordinates   1845606..1846079 (-) Length   157 a.a.
NCBI ID   WP_002230430.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1840606..1851079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS10820 (A6J54_10480) dut 1841291..1841743 (-) 453 WP_002232309.1 dUTP diphosphatase -
  A6J54_RS10825 (A6J54_10485) - 1841886..1842314 (+) 429 Protein_1764 AzlC family ABC transporter permease -
  A6J54_RS10860 (A6J54_10520) pilX 1845606..1846079 (-) 474 WP_002230430.1 PilX family type IV pilin Machinery gene
  A6J54_RS10865 (A6J54_10525) pilK 1846084..1846677 (-) 594 WP_002229321.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  A6J54_RS10870 (A6J54_10530) pilJ 1846656..1847609 (-) 954 WP_002259883.1 PilW family protein Machinery gene
  A6J54_RS10875 (A6J54_10535) pilV 1847606..1848226 (-) 621 WP_002253554.1 type IV pilus modification protein PilV Machinery gene
  A6J54_RS10880 (A6J54_10540) pilH 1848256..1848924 (-) 669 WP_002259882.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  A6J54_RS10890 (A6J54_10545) dnaB 1849226..1850632 (-) 1407 WP_002219448.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17472.18 Da        Isoelectric Point: 9.1946

>NTDB_id=222223 A6J54_RS10860 WP_002230430.1 1845606..1846079(-) (pilX) [Neisseria meningitidis strain FDAARGOS_215]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNISKQFILKNPLDDNQTIKSKLEIFVSGYKM
NPKIAEKYNVSVHFVNKEKPRAYSLVGVPKTGTGYTLSVWMNSVGDGYKCRDAASAQAHLETLSSDAGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=222223 A6J54_RS10860 WP_002230430.1 1845606..1846079(-) (pilX) [Neisseria meningitidis strain FDAARGOS_215]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTCGTCGCGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAAAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATATTTCCAAAC
AGTTTATTTTGAAAAATCCCCTGGACGATAATCAGACCATCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCGAAAAATATAATGTTTCGGTGCATTTTGTCAATAAGGAAAAACCAAGGGCATACAGCTTGGTCGG
CGTTCCAAAGACGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCG
CTTCTGCCCAAGCCCATTTGGAGACCTTGTCCTCAGATGCCGGCTGTGAAGCCTTCTCTAATCGTAAAAAATAA

Domains

Predicted by InterproScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Neisseria meningitidis 8013

98.089

100

0.981
  pilL Neisseria gonorrhoeae MS11

87.261

100

0.873

Multiple sequence alignment