Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   A6J54_RS09140 Genome accession   NZ_CP020402
Coordinates   1578235..1579980 (+) Length   581 a.a.
NCBI ID   WP_080542190.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_215     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1573235..1584980
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J54_RS09115 (A6J54_08835) - 1573442..1574980 (+) 1539 WP_014574004.1 SurA N-terminal domain-containing protein -
  A6J54_RS09120 (A6J54_08840) recR 1575047..1575664 (+) 618 WP_002217147.1 recombination mediator RecR -
  A6J54_RS09125 (A6J54_08845) - 1575750..1576028 (-) 279 WP_002220967.1 hypothetical protein -
  A6J54_RS09130 (A6J54_08850) - 1576233..1577480 (+) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  A6J54_RS09135 (A6J54_08855) lolD 1577473..1578168 (+) 696 WP_013448920.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6J54_RS09140 (A6J54_08860) recD 1578235..1579980 (+) 1746 WP_080542190.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A6J54_RS09145 (A6J54_08865) - 1580052..1581155 (-) 1104 WP_002235817.1 class I SAM-dependent methyltransferase -
  A6J54_RS09150 (A6J54_08870) - 1581130..1581306 (-) 177 WP_226876290.1 nitric oxide synthase -
  A6J54_RS09160 (A6J54_08875) lon 1581406..1583868 (+) 2463 WP_080542192.1 endopeptidase La -
  A6J54_RS09165 (A6J54_08880) - 1584050..1584319 (+) 270 WP_002213508.1 HU family DNA-binding protein -
  A6J54_RS09170 (A6J54_08885) - 1584378..1584812 (-) 435 WP_002217157.1 hypothetical protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 62867.46 Da        Isoelectric Point: 5.9095

>NTDB_id=222222 A6J54_RS09140 WP_080542190.1 1578235..1579980(+) (recD) [Neisseria meningitidis strain FDAARGOS_215]
MERQTDEFAQAAARAAIRFLERYAGSGSEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFNPVYPLPFDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEEAFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=222222 A6J54_RS09140 WP_080542190.1 1578235..1579980(+) (recD) [Neisseria meningitidis strain FDAARGOS_215]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGGTTTTTGGAACGCTATGCGGGTTCGGG
CAGCGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGACCCGGGACGGGTAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCCAAAATGCAGGCGGCGTTCAACCCTGTTTACCCGCTGCCGTTTGACGTATTG
GTTATCGATGAAGCCTCTATGCTGGATACGGCATTGATGCTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGCTGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGATTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATACCGGGAAGTATGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGAGAGAAGTTCGTATTCTTCGGCGGGGAAGAAGCCTTCCGGCAAGCTGCC
GCCACCGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)

AAA domain (AAA_30)

(125-290)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.697

100

0.957

Multiple sequence alignment