Detailed information NTG0222215

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: C2H94_RS11980
• Genome accession: NZ_CP026034
• Coordinates: 2252037..2253158 (+)
• Length: 373 a.a.
• NCBI ID: WP_003234740.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain PK5_52
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 2247037..2258158

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C2H94_RS11955 (C2H94_11920)	ycdA	2247042..2248106 (-)	1065	WP_003234750.1	DUF4352 domain-containing protein	-
C2H94_RS11960	-	2248107..2248259 (-)	153	WP_021481864.1	hypothetical protein	-
C2H94_RS11965 (C2H94_11925)	ycdB	2248433..2249854 (+)	1422	WP_249849590.1	YcdB/YcdC domain-containing protein	-
C2H94_RS11970 (C2H94_11930)	ycdC	2250041..2251414 (+)	1374	WP_249849591.1	YcdB/YcdC domain-containing protein	-
C2H94_RS11975 (C2H94_11935)	cwlK	2251411..2251914 (-)	504	WP_249849592.1	peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	-
C2H94_RS11980 (C2H94_11940)	rapF	2252037..2253158 (+)	1122	WP_003234740.1	response regulator aspartate phosphatase RapJ	Regulator
C2H94_RS11985 (C2H94_11945)	ycdF	2253267..2254043 (+)	777	WP_003234739.1	SDR family oxidoreductase	-
C2H94_RS11990 (C2H94_11950)	ycdG	2254068..2255753 (+)	1686	WP_046160023.1	alpha-glucosidase	-
C2H94_RS11995 (C2H94_11955)	znuA	2255941..2256900 (+)	960	WP_003234733.1	metal ABC transporter substrate-binding protein	-
C2H94_RS12000 (C2H94_11960)	znuC	2256955..2257650 (+)	696	WP_014475714.1	zinc ABC transporter ATP-binding protein ZnuC	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44427.31 Da
• Isoelectric Point: 4.8344

>NTDB_id=222215 C2H94_RS11980 WP_003234740.1 2252037..2253158(+) (rapF) [Bacillus subtilis strain PK5_52]
MRAKIPSEEVAVKLNEWYKLIRAFEADQAEALKQEIEYDLEDMEENQDLLLYFSLMEFRHRIMLDKLMPVKDSDTKPPFS
DMLNEIESNQQKLTGLLEYYFYYFRGMYEFKQKNFILAIDHYKHAEEKLEYVEDEIEKAEFLFKVAEVYYHIKQTYFSMN
YASQALDIYTKYELYGRRRVQCEFIIAGNLTDVYHHEKALTHLCSALDHARQLEEAYMIAAAYYNVGHCKYSLGDYKEAE
GYFKTAAAIFEEHNFQQAVQAVFSLTHIYCKEGKYDKAVEAYDRGIKSAAEWEDDMYLTKFRLIHELYLGNGDLNVLTEC
FDLLESRQLLADAEDLLHDTAERFNQLEHYESAAFFYRRLMNIKKKLAEQRFQ

Nucleotide

• Length: 1122 bp

>NTDB_id=222215 C2H94_RS11980 WP_003234740.1 2252037..2253158(+) (rapF) [Bacillus subtilis strain PK5_52]
ATGAGAGCAAAGATTCCATCAGAAGAAGTAGCAGTAAAGCTGAATGAATGGTACAAGCTCATTCGCGCATTTGAAGCAGA
TCAAGCAGAAGCGTTAAAGCAGGAGATTGAATACGATTTAGAAGATATGGAAGAGAACCAGGACTTGCTTTTATATTTTT
CTTTGATGGAATTCCGGCATCGAATCATGCTTGATAAGCTGATGCCGGTGAAAGACAGCGACACCAAGCCTCCATTCTCT
GATATGCTGAACGAAATTGAAAGCAATCAGCAAAAACTCACGGGCTTATTGGAATATTACTTTTATTATTTCAGAGGAAT
GTACGAATTCAAGCAGAAAAATTTCATATTAGCGATTGACCATTATAAACATGCCGAGGAAAAGCTCGAGTATGTCGAGG
ATGAGATCGAAAAAGCTGAGTTTCTTTTTAAAGTCGCAGAAGTGTATTATCACATCAAACAAACGTATTTTTCCATGAAT
TATGCGAGCCAGGCGCTTGATATCTATACGAAATATGAACTGTACGGTCGCCGCCGGGTTCAGTGTGAATTTATCATCGC
CGGAAATTTGACCGATGTGTATCATCATGAAAAAGCACTGACCCACTTGTGCAGCGCTTTAGATCATGCCAGGCAGCTTG
AAGAAGCGTACATGATCGCCGCTGCCTATTATAATGTCGGACACTGTAAGTACAGTCTGGGTGATTACAAAGAAGCGGAG
GGCTATTTCAAAACAGCCGCCGCCATTTTTGAGGAGCACAACTTTCAGCAAGCTGTTCAAGCTGTATTTTCACTGACCCA
TATCTACTGTAAAGAGGGAAAATACGACAAAGCAGTAGAGGCGTATGACCGCGGGATAAAGAGCGCGGCTGAATGGGAGG
ATGACATGTACTTGACGAAATTCCGCCTCATTCATGAGCTGTATCTTGGAAACGGTGACCTGAACGTGCTTACAGAATGC
TTTGACCTGCTGGAATCCAGGCAGCTTCTTGCAGACGCCGAAGATCTGCTGCATGATACAGCGGAACGTTTCAATCAGCT
GGAACATTACGAGTCCGCCGCTTTCTTTTACCGCAGGCTGATGAATATTAAAAAGAAGCTTGCCGAGCAGCGTTTTCAAT
AG

Domains

Predicted by InterProScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.391	98.66	0.418
rapC	Bacillus subtilis subsp. subtilis str. 168	41.257	98.123	0.405