Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C2H94_RS10660 Genome accession   NZ_CP026034
Coordinates   2011143..2011373 (+) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PK5_52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2006143..2016373
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS10630 (C2H94_10580) ridA 2006307..2006684 (+) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -
  C2H94_RS10635 (C2H94_10585) spoVG 2006879..2007172 (+) 294 WP_003218346.1 septation regulator SpoVG -
  C2H94_RS10640 (C2H94_10590) glmU 2007365..2008735 (+) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C2H94_RS10645 (C2H94_10595) prs 2008758..2009711 (+) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C2H94_RS10650 (C2H94_10600) ctc 2009796..2010410 (+) 615 WP_003243443.1 50S ribosomal protein L25/general stress protein Ctc -
  C2H94_RS10655 (C2H94_10605) pth 2010517..2011083 (+) 567 WP_249849583.1 aminoacyl-tRNA hydrolase -
  C2H94_RS10660 (C2H94_10610) subA/fin 2011143..2011373 (+) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C2H94_RS10665 (C2H94_10615) mfd 2011443..2014976 (+) 3534 WP_153257183.1 transcription-repair coupling factor -
  C2H94_RS10670 (C2H94_10620) spoVT 2015112..2015648 (+) 537 WP_003218365.1 stage V sporulation protein T -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=222209 C2H94_RS10660 WP_003243417.1 2011143..2011373(+) (subA/fin) [Bacillus subtilis strain PK5_52]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=222209 C2H94_RS10660 WP_003243417.1 2011143..2011373(+) (subA/fin) [Bacillus subtilis strain PK5_52]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment