Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   SP_RS05715 Genome accession   NC_003028
Coordinates   1094109..1095179 (+) Length   356 a.a.
NCBI ID   WP_000817881.1    Uniprot ID   Q97QP2
Organism   Streptococcus pneumoniae TIGR4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1089109..1100179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS13860 - 1089992..1090123 (+) 132 WP_079117188.1 LPXTG cell wall anchor domain-containing protein -
  SP_RS05700 (SP_1155) ylqF 1090342..1091193 (+) 852 WP_000201315.1 ribosome biogenesis GTPase YlqF -
  SP_RS05705 (SP_1156) - 1091180..1091959 (+) 780 WP_000201098.1 ribonuclease HII -
  SP_RS05710 (SP_1157) - 1091975..1093525 (+) 1551 WP_000392544.1 ClC family H(+)/Cl(-) exchange transporter -
  SP_RS05715 (SP_1159) xerS 1094109..1095179 (+) 1071 WP_000817881.1 tyrosine recombinase XerS Machinery gene
  SP_RS05720 (SP_1160) - 1095244..1096233 (-) 990 WP_000873990.1 lipoate--protein ligase -
  SP_RS05725 (SP_1161) lpdA 1096297..1098000 (-) 1704 WP_001162908.1 dihydrolipoyl dehydrogenase -
  SP_RS05730 (SP_1162) - 1098046..1099089 (-) 1044 WP_000752705.1 dihydrolipoamide acetyltransferase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41190.27 Da        Isoelectric Point: 9.5475

>NTDB_id=22220 SP_RS05715 WP_000817881.1 1094109..1095179(+) (xerS) [Streptococcus pneumoniae TIGR4]
MKREILLERIDKLKQLMPWYVLEYYQSKLAVPYSFTTLYEYLKEYDRFFSWVLESGISNADKISDIPLSVLENMSKKDME
SFILYLRERPLLNANTTKQGVSQTTINRTLSALSSLYKYLTEEVENDQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETEGFLTYIDQEHPQQLSNRALSSFNKNKERDLAIIALLLASGVRLSEAVNLDLRDLNLKMMVIDVTRKGCKRDS
VNVAAFAKPYLENYLAIRNQRYKTEKTDTALFLTLYRGVPNRIDASSVEKMVAKYSEDFKVRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVSDEQKNALDSL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=22220 SP_RS05715 WP_000817881.1 1094109..1095179(+) (xerS) [Streptococcus pneumoniae TIGR4]
ATGAAACGTGAGATTTTACTGGAACGAATCGACAAACTAAAACAACTCATGCCCTGGTATGTTCTGGAATACTACCAATC
TAAGCTGGCTGTGCCCTACAGTTTTACAACCCTGTACGAATACCTTAAGGAATATGACCGATTTTTCAGCTGGGTTTTGG
AGTCTGGTATTTCAAACGCTGATAAAATATCCGATATTCCTTTATCAGTTTTGGAAAATATGTCTAAGAAAGACATGGAA
TCCTTTATCCTTTATCTACGTGAACGTCCCTTGCTGAATGCTAATACAACAAAACAAGGTGTTTCACAGACAACTATCAA
TCGAACCTTATCAGCACTTTCTAGTCTTTACAAGTATCTAACCGAGGAGGTTGAAAACGATCAGGGGGAACCTTATTTCT
ATCGTAATGTAATGAAAAAAGTTTCCACCAAGAAAAAGAAAGAAACCCTTGCTGCCAGAGCTGAAAATATCAAGCAAAAA
CTCTTTCTAGGTGATGAAACAGAAGGTTTTCTAACTTATATCGATCAAGAGCACCCACAACAGCTTTCAAATCGAGCTCT
CTCATCATTCAACAAAAATAAAGAACGAGATTTAGCCATTATTGCCCTTCTCTTGGCATCTGGTGTTCGCTTATCTGAAG
CTGTTAATCTAGATCTAAGAGATCTCAATCTAAAAATGATGGTTATTGATGTTACTCGAAAAGGTTGCAAACGTGACTCA
GTCAATGTCGCTGCTTTTGCTAAACCTTATTTAGAGAATTATCTGGCCATTCGGAATCAACGCTATAAAACGGAAAAAAC
AGATACAGCCCTTTTTTTAACTCTCTACAGAGGTGTTCCTAATCGTATCGATGCTTCTAGCGTTGAGAAAATGGTTGCTA
AATACTCAGAGGATTTTAAAGTGCGTGTAACACCCCATAAACTGCGCCATACACTAGCAACTAGGCTCTATGATGCGACT
AAATCACAAGTTTTAGTCAGTCACCAACTAGGACATGCTAGCACACAAGTCACTGACCTCTATACCCATATTGTTAGTGA
TGAACAAAAGAATGCTCTGGATAGTTTATGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(188-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_1)

(71-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q97QP2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

99.438

100

0.994

Multiple sequence alignment