Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   C2H94_RS09620 Genome accession   NZ_CP026034
Coordinates   1818145..1818834 (-) Length   229 a.a.
NCBI ID   WP_212082607.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK5_52     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1813145..1823834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H94_RS09600 (C2H94_09555) yxeA 1814050..1814397 (-) 348 WP_021481023.1 YxeA family protein -
  C2H94_RS09605 (C2H94_09560) yxdM 1814411..1816279 (-) 1869 WP_017696088.1 ABC transporter permease YxdM -
  C2H94_RS09610 (C2H94_09565) yxdL 1816254..1817027 (-) 774 WP_021481025.1 ABC transporter ATP-binding protein YxdL -
  C2H94_RS09615 (C2H94_09570) yxdK 1817171..1818148 (-) 978 WP_015385109.1 two-component system sensor histidine kinase YxdK -
  C2H94_RS09620 (C2H94_09575) braR 1818145..1818834 (-) 690 WP_212082607.1 response regulator transcription factor Regulator
  C2H94_RS09625 (C2H94_09580) iolJ 1818942..1819814 (-) 873 WP_014478478.1 6-phospho-5-dehydro-2-deoxy-D-gluconate aldolase -
  C2H94_RS09630 (C2H94_09585) iolI 1819835..1820671 (-) 837 WP_015483926.1 2-keto-myo-inositol isomerase -
  C2H94_RS09635 (C2H94_09590) iolH 1820757..1821626 (-) 870 WP_015250852.1 sugar phosphate isomerase/epimerase -
  C2H94_RS09640 (C2H94_09595) iolG 1821646..1822680 (-) 1035 WP_003244482.1 bifunctional inositol 2-dehydrogenase/D-chiro-inositol 1-dehydrogenase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 26699.48 Da        Isoelectric Point: 4.9648

>NTDB_id=222199 C2H94_RS09620 WP_212082607.1 1818145..1818834(-) (braR) [Bacillus subtilis strain PK5_52]
MNKIMIVEDSEDIRGLLQNYLEKYRYQTVVAADFTAVLDVFLREKPDVVLLDINLPAYDGYYWCRQIRQHSTSPIIFISA
RSGEMDQVMAIENGGDDYIEKPFSYDIVLAKIKSQIRRAYGEYAAKQGEKVVEYAGVQLFVERFELRFQDEKSELSKKES
KLLEVLLERGEKVTSRDRLMEKTWDTDIFIDDNTLNVYITRLRKKLRELNAPVSIEAVRGEGYQLRAQS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=222199 C2H94_RS09620 WP_212082607.1 1818145..1818834(-) (braR) [Bacillus subtilis strain PK5_52]
TTGAATAAAATCATGATTGTGGAAGACAGTGAAGACATTCGCGGACTATTGCAGAATTACCTTGAAAAATACAGATATCA
AACAGTGGTCGCCGCGGATTTTACAGCTGTTCTTGATGTCTTTTTGCGGGAAAAGCCCGATGTGGTGCTGCTTGATATCA
ATTTGCCGGCATATGACGGATATTATTGGTGCCGGCAGATCCGCCAGCACTCCACAAGCCCGATCATCTTTATTTCTGCC
AGAAGCGGGGAAATGGATCAGGTGATGGCGATTGAAAATGGGGGAGACGATTATATCGAAAAACCGTTTTCTTATGATAT
TGTGCTTGCGAAAATCAAAAGCCAGATCCGGAGGGCGTACGGGGAGTACGCCGCAAAGCAGGGAGAGAAAGTGGTTGAAT
ATGCCGGCGTTCAGCTCTTTGTGGAACGGTTTGAACTGCGTTTTCAGGATGAAAAAAGCGAGCTTTCTAAAAAAGAAAGC
AAGCTTTTGGAAGTGCTGCTTGAGCGGGGAGAAAAGGTGACGAGTCGGGACCGTCTCATGGAAAAGACGTGGGACACCGA
CATATTCATCGATGATAATACACTTAACGTGTATATCACGCGGCTCAGAAAAAAACTGCGAGAGCTGAATGCGCCTGTTT
CTATTGAAGCGGTGCGGGGCGAAGGCTACCAGCTGAGGGCGCAGTCATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(151-225)

Response regulator receiver domain (Response_reg)

(4-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.704

97.38

0.406

Multiple sequence alignment