Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD   Type   Machinery gene
Locus tag   A6J53_RS11810 Genome accession   NZ_CP020401
Coordinates   1964106..1965851 (-) Length   581 a.a.
NCBI ID   WP_002256642.1    Uniprot ID   A0A378VNV3
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1959106..1970851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS11780 (A6J53_11435) - 1959330..1959764 (+) 435 WP_002220974.1 hypothetical protein -
  A6J53_RS11785 (A6J53_11440) - 1959823..1960092 (-) 270 WP_002213508.1 HU family DNA-binding protein -
  A6J53_RS11790 (A6J53_11445) lon 1960274..1962724 (-) 2451 WP_002220973.1 endopeptidase La -
  A6J53_RS11805 (A6J53_11455) - 1962975..1964078 (+) 1104 WP_002220972.1 class I SAM-dependent methyltransferase -
  A6J53_RS11810 (A6J53_11460) recD 1964106..1965851 (-) 1746 WP_002256642.1 exodeoxyribonuclease V subunit alpha Machinery gene
  A6J53_RS11815 (A6J53_11465) lolD 1965919..1966614 (-) 696 WP_002217149.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  A6J53_RS11820 (A6J53_11470) - 1966607..1967854 (-) 1248 WP_002217148.1 lipoprotein-releasing ABC transporter permease subunit -
  A6J53_RS11825 (A6J53_11480) - 1968058..1968336 (+) 279 WP_002213502.1 hypothetical protein -
  A6J53_RS11830 (A6J53_11485) recR 1968392..1969009 (-) 618 WP_002217147.1 recombination mediator RecR -
  A6J53_RS11835 (A6J53_11490) - 1969076..1970614 (-) 1539 WP_002256643.1 SurA N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 63022.57 Da        Isoelectric Point: 5.7351

>NTDB_id=222181 A6J53_RS11810 WP_002256642.1 1964106..1965851(-) (recD) [Neisseria meningitidis strain FDAARGOS_214]
MERQTDEFAQAAARAAIWFLARYAGSGDEVLANCTERLFQALQNGHSFIRLSGGEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAADTSAPDAAGARQNLAKWFQGTGSEGQRDAAALALLQSFMVITGGPGTGKTTTVAKLLA
LICGEDENLPNIALAAPTGKAAAHMARALHRAINGFDEPEAVRRHLLKLEGQTVHRLLKLRPPKMQAAFDHIRPLPLDVL
VIDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSHKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAAVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSHVRRKMNIPEHQAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPDFEPAFAMTVHKSQGSEYREVWLLPPSAAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGEETFRQAA
ATVKTRQTALGSMLERVFSQE

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=222181 A6J53_RS11810 WP_002256642.1 1964106..1965851(-) (recD) [Neisseria meningitidis strain FDAARGOS_214]
ATGGAACGGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCTGGTTTTTGGCACGCTATGCGGGTTCCGG
CGACGAAGTGCTTGCAAACTGCACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGTG
GCGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAGATAAAACGCTTGGCGGCAGCCGACACGTCCGCCCC
CGACGCGGCAGGCGCGAGGCAAAACCTCGCAAAATGGTTTCAAGGCACGGGCAGCGAAGGGCAGCGCGATGCCGCCGCCT
TGGCACTGTTGCAGTCTTTTATGGTGATTACCGGCGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCG
CTGATTTGCGGTGAAGACGAAAATCTTCCCAACATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCGCTGCACCGTGCAATCAACGGTTTTGACGAGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTGAAGCTGCGCCCGCCTAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTGGACGTATTG
GTTATCGATGAAGCCTCCATGTTGGATACCGCATTGATGTTGCAACTTTTAAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGGGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCACAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGCTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGTGGCATCGGCTGCCTTGCCCGTGCCGCCGTATC
GGGCGATGAGGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGAG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGCATC
TCGGATATCGTGGTCCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCCATGTACGCCGCAA
AATGAACATACCGGAACATCAGGCCTATTTCGCCGGAGAACCGATTATGATCAGACAGAACGACTACGCGCTTGAACTGT
TCAACGGCGACATCGGATTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGATTTCGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGCCGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCGAGGGAGAAGTTCGTATTCTTCGGCGGAGAAGAAACCTTCCGGCAAGCTGCC
GCCACTGTCAAAACGCGTCAGACGGCATTGGGCAGTATGCTCGAGCGGGTATTTTCACAAGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(125-289)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(494-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A378VNV3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD Neisseria gonorrhoeae strain FA1090

95.353

100

0.954

Multiple sequence alignment