Detailed information    

insolico Bioinformatically predicted

Overview


Name   tpc   Type   Machinery gene
Locus tag   A6J53_RS08540 Genome accession   NZ_CP020401
Coordinates   1442116..1443114 (-) Length   332 a.a.
NCBI ID   WP_002256486.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_214     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context


Location: 1437116..1448114
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J53_RS08515 (A6J53_08325) - 1438494..1439120 (-) 627 WP_002214161.1 phosphoribosylanthranilate isomerase -
  A6J53_RS08520 (A6J53_08330) greB 1439179..1439670 (-) 492 WP_002214159.1 transcription elongation factor GreB -
  A6J53_RS08525 (A6J53_08335) purF 1439770..1441314 (-) 1545 WP_002256484.1 amidophosphoribosyltransferase -
  A6J53_RS15345 (A6J53_14580) - 1441423..1441590 (-) 168 WP_153559767.1 hypothetical protein -
  A6J53_RS08535 (A6J53_08340) - 1441626..1442123 (-) 498 WP_002256485.1 CvpA family protein -
  A6J53_RS08540 (A6J53_08345) tpc 1442116..1443114 (-) 999 WP_002256486.1 cell division protein FtsN Machinery gene
  A6J53_RS08545 (A6J53_08350) folC 1443127..1444401 (-) 1275 WP_002222776.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  A6J53_RS08550 (A6J53_08355) - 1444433..1444879 (-) 447 WP_002222775.1 protein YgfX -
  A6J53_RS08555 (A6J53_08360) - 1444884..1445243 (-) 360 WP_002221265.1 hypothetical protein -
  A6J53_RS08560 (A6J53_08365) - 1445316..1446044 (-) 729 WP_002233691.1 amino acid ABC transporter ATP-binding protein -
  A6J53_RS08565 (A6J53_08370) rsmA 1446217..1446996 (-) 780 WP_002229195.1 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA -
  A6J53_RS08575 (A6J53_08380) - 1447193..1447903 (+) 711 WP_002256487.1 uracil-DNA glycosylase family protein -

Sequence


Protein


Download         Length: 332 a.a.        Molecular weight: 35550.92 Da        Isoelectric Point: 10.1759

>NTDB_id=222170 A6J53_RS08540 WP_002256486.1 1442116..1443114(-) (tpc) [Neisseria meningitidis strain FDAARGOS_214]
MSENKQNEVLSGYEQLKRRNRRRLVTASCLVAASCILLAAALSSGPAEQTAGETSGVENKAAGAAQTPALKSAADKPQDL
AGEDKPSAADSEISEPENVGAPLVLINDRLEDSNIKGLEASEKLQQAETAKTAPKQAKQRAAEKVPATADSTDTVAVEKP
KRTAETKPQKAERTAKAKPKAKETKTAEKVADKPKTAAEKTKPDTAKSDSAVKEAKKADKAESKKTAEKDRSDGKKHETA
QKTDKADKTKTAEKEKSGKKAAIQAGYTEKERALSLQRKMKAAGIDSTITEIMTDNGKVYRVKSSNYKNARDAERDLNKL
RVHGIAGQVTNE

Nucleotide


Download         Length: 999 bp        

>NTDB_id=222170 A6J53_RS08540 WP_002256486.1 1442116..1443114(-) (tpc) [Neisseria meningitidis strain FDAARGOS_214]
ATGTCCGAAAACAAACAAAACGAAGTCCTGAGCGGTTACGAACAACTCAAACGGCGCAACCGCCGCCGCCTCGTAACGGC
AAGTTGCCTGGTTGCCGCCTCCTGCATCCTGCTGGCAGCCGCCCTCAGTTCCGGCCCTGCCGAACAGACTGCCGGCGAAA
CAAGCGGCGTAGAAAACAAAGCGGCAGGTGCGGCACAAACCCCTGCCTTGAAATCCGCCGCCGACAAACCGCAGGACTTG
GCAGGCGAAGACAAGCCTTCTGCCGCCGACAGCGAAATCAGCGAGCCTGAAAACGTAGGCGCGCCGCTGGTGCTGATTAA
CGACCGCCTCGAAGACAGCAACATCAAAGGTTTGGAAGCATCCGAGAAACTGCAACAGGCAGAAACCGCCAAAACCGCAC
CGAAGCAGGCAAAACAACGCGCTGCCGAAAAAGTGCCGGCAACTGCCGACAGTACGGATACGGTAGCGGTTGAAAAACCG
AAACGCACTGCCGAAACAAAACCGCAAAAAGCGGAACGCACTGCCAAAGCCAAGCCCAAAGCCAAAGAAACCAAAACCGC
CGAAAAAGTTGCCGACAAACCGAAAACTGCCGCCGAAAAAACCAAACCGGATACGGCAAAATCCGACAGCGCGGTAAAAG
AAGCGAAAAAAGCCGACAAGGCTGAAAGCAAAAAAACAGCCGAAAAAGACCGTTCGGACGGCAAAAAACACGAAACGGCA
CAAAAAACCGACAAAGCGGACAAGACCAAAACCGCCGAGAAGGAAAAATCCGGTAAAAAAGCCGCCATTCAGGCAGGTTA
TACCGAAAAAGAACGCGCCTTAAGCCTCCAGCGCAAAATGAAGGCGGCGGGTATCGATTCGACCATCACCGAAATTATGA
CCGACAACGGCAAAGTTTACCGCGTCAAATCAAGCAACTATAAAAACGCAAGGGATGCCGAACGCGATTTGAACAAATTG
CGCGTACACGGTATCGCCGGTCAGGTAACGAATGAATAA

Domains


Predicted by InterproScan.

(259-330)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tpc Neisseria gonorrhoeae MS11

89.595

100

0.934


Multiple sequence alignment