Detailed information    

insolico Bioinformatically predicted

Overview

Name   HI0659   Type   Machinery gene
Locus tag   SP_RS05660 Genome accession   NC_003028
Coordinates   1071640..1071933 (+) Length   97 a.a.
NCBI ID   WP_000794247.1    Uniprot ID   A0A0H2UQ20
Organism   Streptococcus pneumoniae TIGR4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1066640..1076933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SP_RS05620 (SP_1135) - 1067176..1067628 (+) 453 WP_000141102.1 hypothetical protein -
  SP_RS05625 (SP_1136) - 1067625..1068071 (+) 447 WP_000171242.1 DnaD domain protein -
  SP_RS05630 (SP_1137) - 1068083..1068967 (+) 885 WP_000838905.1 ATP-binding protein -
  SP_RS05635 (SP_1139) - 1069216..1069866 (+) 651 WP_000138311.1 hypothetical protein -
  SP_RS05640 (SP_1140) - 1069913..1070341 (+) 429 WP_000918210.1 hypothetical protein -
  SP_RS05645 (SP_1141) - 1070349..1070660 (+) 312 WP_001113833.1 hypothetical protein -
  SP_RS05650 (SP_1142) - 1070678..1071088 (+) 411 WP_000162610.1 hypothetical protein -
  SP_RS05655 (SP_1143) - 1071285..1071650 (+) 366 WP_000551587.1 type II toxin-antitoxin system RelE/ParE family toxin -
  SP_RS05660 (SP_1144) HI0659 1071640..1071933 (+) 294 WP_000794247.1 helix-turn-helix domain-containing protein Machinery gene
  SP_RS05665 (SP_1145) - 1071951..1073141 (+) 1191 WP_000123149.1 hypothetical protein -
  SP_RS13035 (SP_1146) - 1073144..1073320 (+) 177 WP_000346914.1 hypothetical protein -
  SP_RS12125 - 1073640..1074086 (-) 447 WP_061631657.1 tyrosine-type recombinase/integrase -
  SP_RS12130 - 1073986..1074831 (-) 846 Protein_1084 IS630 family transposase -
  SP_RS12795 - 1075002..1075157 (+) 156 Protein_1085 diacylglycerol/lipid kinase family protein -

Sequence

Protein


Download         Length: 97 a.a.        Molecular weight: 10751.45 Da        Isoelectric Point: 5.1991

>NTDB_id=22217 SP_RS05660 WP_000794247.1 1071640..1071933(+) (HI0659) [Streptococcus pneumoniae TIGR4]
MKNNAIGSNWKDVRAELFSKEEILESDMRVAIMSELIEARNEKGISQKKLEEMSGVSQPVIARMETGKTSPQLDTVLKVL
ASLGKTLAVVPLEHEQV

Nucleotide


Download         Length: 294 bp        

>NTDB_id=22217 SP_RS05660 WP_000794247.1 1071640..1071933(+) (HI0659) [Streptococcus pneumoniae TIGR4]
ATGAAAAATAATGCTATTGGTAGTAACTGGAAAGATGTAAGAGCTGAATTATTCAGCAAAGAGGAAATTTTGGAAAGTGA
TATGCGCGTGGCTATCATGAGTGAGCTTATCGAGGCTAGAAATGAAAAGGGTATTAGTCAGAAGAAACTAGAGGAGATGA
GCGGTGTTAGTCAGCCAGTTATCGCTAGAATGGAAACAGGAAAGACAAGCCCACAACTTGATACAGTATTAAAAGTGTTG
GCAAGTCTTGGTAAGACCTTAGCTGTTGTACCATTAGAGCATGAGCAGGTTTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(37-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 6AF3
  PDB 6AF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  HI0659 Haemophilus influenzae Rd KW20

57.143

93.814

0.536