Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   C2H91_RS19360 Genome accession   NZ_CP026030
Coordinates   3834450..3835940 (+) Length   496 a.a.
NCBI ID   WP_015251799.1    Uniprot ID   -
Organism   Bacillus subtilis strain PK3_9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3829450..3840940
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS19340 (C2H91_19355) serA 3830199..3831776 (-) 1578 WP_004398713.1 phosphoglycerate dehydrogenase -
  C2H91_RS19345 (C2H91_19360) fmnP 3832273..3832845 (+) 573 WP_249850953.1 riboflavin transporter FmnP -
  C2H91_RS19350 (C2H91_19365) fer 3832885..3833133 (-) 249 WP_003225461.1 ferredoxin -
  C2H91_RS19355 (C2H91_19370) gmmB 3833399..3834457 (+) 1059 WP_249851342.1 helix-turn-helix domain-containing protein -
  C2H91_RS19360 (C2H91_19375) recS 3834450..3835940 (+) 1491 WP_015251799.1 ATP-dependent DNA helicase RecQ Machinery gene
  C2H91_RS19365 (C2H91_19380) ypbD 3835967..3836569 (+) 603 WP_024573135.1 CPBP family intramembrane glutamic endopeptidase -
  C2H91_RS19370 (C2H91_19385) ypbE 3836520..3837251 (+) 732 WP_153256909.1 LysM peptidoglycan-binding domain-containing protein -
  C2H91_RS19375 (C2H91_19390) ypbF 3837314..3837757 (+) 444 WP_003230531.1 YpbF family protein -
  C2H91_RS19380 (C2H91_19395) ypbG 3837843..3838622 (+) 780 WP_003230532.1 metallophosphoesterase -
  C2H91_RS19385 (C2H91_19400) mecB 3838781..3839365 (+) 585 WP_003230533.1 genetic competence negative regulator -
  C2H91_RS19390 (C2H91_19405) gudB 3839521..3840795 (+) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56509.05 Da        Isoelectric Point: 6.4518

>NTDB_id=222131 C2H91_RS19360 WP_015251799.1 3834450..3835940(+) (recS) [Bacillus subtilis strain PK3_9]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMHRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=222131 C2H91_RS19360 WP_015251799.1 3834450..3835940(+) (recS) [Bacillus subtilis strain PK3_9]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
TATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGGCAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAATCTGCAAGGCCCGGGAATTGTTTATTGTCCGACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CCGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCCGATATCAGATATGTGATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGCCGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTGATCCGGGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTTC
GTGACGTATTACTTCAGTATGGCGTCGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGCACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTATTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.798

100

0.998