Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   A8H33_RS08285 Genome accession   NZ_CP020394
Coordinates   1606851..1608356 (-) Length   501 a.a.
NCBI ID   WP_045578772.1    Uniprot ID   -
Organism   Burkholderia vietnamiensis strain FDAARGOS_239     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1601851..1613356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A8H33_RS08260 (A8H33_23790) - 1602878..1603516 (-) 639 WP_011886060.1 LON peptidase substrate-binding domain-containing protein -
  A8H33_RS08265 (A8H33_23795) rapZ 1603544..1604452 (-) 909 WP_034192566.1 RNase adapter RapZ -
  A8H33_RS08270 (A8H33_23800) hprK 1604528..1605496 (-) 969 WP_006483133.1 HPr(Ser) kinase/phosphatase -
  A8H33_RS08275 (A8H33_23805) - 1605626..1606138 (-) 513 WP_011886058.1 PTS sugar transporter subunit IIA -
  A8H33_RS08280 (A8H33_23810) hpf 1606333..1606692 (-) 360 WP_011886057.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  A8H33_RS08285 (A8H33_23815) rpoN/rpoN1 1606851..1608356 (-) 1506 WP_045578772.1 RNA polymerase factor sigma-54 Machinery gene
  A8H33_RS08290 (A8H33_23820) lptB 1608519..1609295 (-) 777 WP_011886055.1 LPS export ABC transporter ATP-binding protein -
  A8H33_RS08295 (A8H33_23825) lptA 1609292..1609957 (-) 666 WP_011886054.1 lipopolysaccharide transport periplasmic protein LptA -
  A8H33_RS08300 (A8H33_23830) lptC 1609978..1610592 (-) 615 WP_011886053.1 LPS export ABC transporter periplasmic protein LptC -
  A8H33_RS08305 (A8H33_23835) - 1610596..1611132 (-) 537 WP_011886052.1 KdsC family phosphatase -
  A8H33_RS08310 (A8H33_23840) kdsD 1611132..1612115 (-) 984 WP_014723665.1 arabinose 5-phosphate isomerase KdsD -

Sequence

Protein


Download         Length: 501 a.a.        Molecular weight: 54828.98 Da        Isoelectric Point: 4.8247

>NTDB_id=222102 A8H33_RS08285 WP_045578772.1 1606851..1608356(-) (rpoN/rpoN1) [Burkholderia vietnamiensis strain FDAARGOS_239]
MKASLQLRLSQHLALTPQLQQSIRLLQLSTLELQQEVAMAVAQNPLLESDDEWIASPLRVAADGSLIAQTPPAPNGESGS
MNGSGQSSERAERDEPAATDEYDGYGSGDTSDGPQWNLDEFGRSSGASDDDDLPPLQVQEAATSLREHLSAQLRVTQASP
RDRALVMFLIESLDDDGYLTASLDEVLADLPPELEVDCDELNAALALLHSFDPAGVGARSASECLKLQLLRLDPSPTRTL
ALEIVSQHLELLAARDFTRLRKQLKASDDALRDAHALIRSLEPFPGAAYGKAEADYVVPDIIVKKAGQGWLAELNPEVMP
RLRINNLYANILRNSRGDPSTGSLKQQLQEARWLIKNIQQRFDTILRVAQAIVERQKNFFAHGEIAMRPLVLREIADTLG
LHESTVSRVTTGKYMLTPFGTLEFKYFFGSHVSTDTGGAASSTAIRALIKQLIGAEDPKSPLSDSRIAELLAEQGFVVAR
RTVAKYREALRIPAVNLRKSL

Nucleotide


Download         Length: 1506 bp        

>NTDB_id=222102 A8H33_RS08285 WP_045578772.1 1606851..1608356(-) (rpoN/rpoN1) [Burkholderia vietnamiensis strain FDAARGOS_239]
ATGAAAGCCAGCCTCCAACTCCGCCTGTCGCAACACCTTGCGTTGACGCCGCAGCTGCAGCAGTCGATTCGGCTTTTGCA
GCTGTCGACGCTCGAGCTGCAGCAGGAAGTCGCGATGGCCGTCGCGCAGAATCCGCTGCTGGAAAGCGACGACGAATGGA
TCGCGAGCCCGCTGCGCGTCGCAGCCGACGGATCGCTGATCGCGCAGACGCCGCCCGCCCCGAACGGCGAGTCCGGCAGC
ATGAACGGCAGCGGCCAGTCGAGCGAGCGCGCCGAACGCGACGAGCCGGCCGCCACCGACGAATACGACGGCTATGGCTC
GGGCGACACGAGCGACGGCCCGCAATGGAATCTCGACGAATTCGGCCGCTCGAGCGGCGCGTCGGACGACGACGATCTCC
CGCCGCTGCAGGTCCAGGAAGCCGCCACATCGCTGCGCGAGCATCTGTCCGCGCAGCTGCGCGTCACGCAGGCCAGCCCG
CGCGATCGCGCGCTCGTGATGTTCCTGATCGAATCGCTCGACGACGACGGCTACCTGACCGCGTCGCTCGACGAAGTGCT
GGCCGACCTGCCGCCCGAACTGGAAGTCGACTGCGACGAGCTGAATGCGGCGCTCGCGCTGCTGCACAGCTTCGATCCGG
CCGGCGTCGGCGCGCGCTCGGCGTCCGAATGCCTGAAGCTGCAACTGCTGCGGCTCGATCCGTCCCCGACCCGCACGCTC
GCGCTGGAAATCGTCTCGCAGCATCTCGAGCTGCTCGCCGCGCGCGACTTCACGCGGCTGCGCAAGCAACTGAAGGCGAG
CGACGACGCGCTGCGCGACGCGCACGCGCTGATCCGCTCGCTGGAGCCGTTCCCGGGCGCGGCCTACGGCAAGGCCGAGG
CCGACTACGTGGTGCCCGACATCATCGTGAAGAAGGCCGGCCAGGGCTGGCTCGCGGAGCTCAATCCGGAGGTGATGCCG
CGCCTGCGGATCAACAACCTGTACGCGAACATTCTGCGCAACAGCCGCGGCGATCCGTCGACCGGATCGTTGAAGCAACA
GCTGCAGGAAGCACGCTGGCTGATCAAGAATATCCAGCAGCGATTCGACACGATCCTGCGTGTCGCGCAGGCTATTGTCG
AACGTCAGAAGAACTTCTTTGCGCACGGCGAAATTGCCATGCGCCCCTTGGTTTTGCGGGAAATAGCTGATACGCTGGGC
CTACACGAGTCGACTGTCAGCCGTGTGACAACCGGTAAGTACATGCTGACCCCGTTCGGGACGCTGGAGTTCAAGTACTT
CTTCGGATCGCACGTTTCGACCGACACCGGAGGCGCCGCATCGTCGACCGCCATCCGAGCCCTGATCAAGCAACTGATAG
GAGCTGAAGACCCAAAGTCGCCACTTTCGGACAGCCGCATTGCCGAGCTGCTGGCAGAACAGGGATTCGTGGTCGCGCGC
CGCACGGTCGCGAAGTATCGCGAAGCCCTCAGGATCCCGGCAGTGAATCTGCGCAAATCTCTTTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(137-328)

Sigma-54, DNA binding domain (Sigma54_DBD)

(344-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

67.836

100

0.695

Multiple sequence alignment