Detailed information    

insolico Bioinformatically predicted

Overview

Name   subA/fin   Type   Machinery gene
Locus tag   C2H91_RS09875 Genome accession   NZ_CP026030
Coordinates   2006851..2007081 (-) Length   76 a.a.
NCBI ID   WP_003243417.1    Uniprot ID   A0ABU0VCT2
Organism   Bacillus subtilis strain PK3_9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2001851..2012081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H91_RS09865 (C2H91_09870) spoVT 2002575..2003111 (-) 537 WP_003218365.1 stage V sporulation protein T -
  C2H91_RS09870 (C2H91_09875) mfd 2003248..2006781 (-) 3534 WP_249851307.1 transcription-repair coupling factor -
  C2H91_RS09875 (C2H91_09880) subA/fin 2006851..2007081 (-) 231 WP_003243417.1 anti-sigma-F factor Fin Machinery gene
  C2H91_RS09880 (C2H91_09885) pth 2007141..2007707 (-) 567 WP_003226727.1 aminoacyl-tRNA hydrolase -
  C2H91_RS09885 (C2H91_09890) ctc 2007814..2008428 (-) 615 WP_161476522.1 50S ribosomal protein L25/general stress protein Ctc -
  C2H91_RS09890 (C2H91_09895) prs 2008513..2009466 (-) 954 WP_003218353.1 ribose-phosphate diphosphokinase -
  C2H91_RS09895 (C2H91_09900) glmU 2009489..2010859 (-) 1371 WP_015382564.1 bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU -
  C2H91_RS09900 (C2H91_09905) spoVG 2011052..2011345 (-) 294 WP_003218346.1 septation regulator SpoVG -
  C2H91_RS09905 (C2H91_09910) ridA 2011540..2011917 (-) 378 WP_003226738.1 2-iminobutanoate/2-iminopropanoate deaminase -

Sequence

Protein


Download         Length: 76 a.a.        Molecular weight: 8847.81 Da        Isoelectric Point: 5.3895

>NTDB_id=222060 C2H91_RS09875 WP_003243417.1 2006851..2007081(-) (subA/fin) [Bacillus subtilis strain PK3_9]
MALHYYCRHCGVKVGSLESSMVSTDSLGFQHLTNEERNDMISYKENGDVHVLTICEDCQEALDRNPHYHEYHTFIQ

Nucleotide


Download         Length: 231 bp        

>NTDB_id=222060 C2H91_RS09875 WP_003243417.1 2006851..2007081(-) (subA/fin) [Bacillus subtilis strain PK3_9]
ATGGCTTTGCATTATTATTGTCGTCATTGCGGAGTGAAAGTAGGCAGTCTCGAATCTTCAATGGTATCGACAGACTCACT
TGGATTTCAGCACTTAACAAATGAGGAAAGAAACGATATGATTTCTTATAAAGAAAATGGAGATGTCCATGTTTTGACGA
TATGTGAAGATTGCCAAGAGGCGCTTGACCGAAATCCGCATTACCACGAATATCACACATTTATTCAATAA

Domains

Predicted by InterProScan.

Anti-sigma-F factor Fin (Fin)

(1-76)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  subA/fin Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment