Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   FORC60_RS22440 Genome accession   NZ_CP020383
Coordinates   4233634..4234380 (-) Length   248 a.a.
NCBI ID   WP_000487009.1    Uniprot ID   -
Organism   Bacillus cereus strain FORC60     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 4228634..4239380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC60_RS22415 (FORC60_4405) dnaG 4229395..4231191 (-) 1797 WP_000528223.1 DNA primase -
  FORC60_RS28890 (FORC60_4406) - 4231273..4231416 (-) 144 WP_000479734.1 hypothetical protein -
  FORC60_RS22430 (FORC60_4408) - 4232052..4232864 (-) 813 WP_000368945.1 pyruvate, water dikinase regulatory protein -
  FORC60_RS22435 (FORC60_4409) - 4232894..4233526 (-) 633 WP_000583756.1 helix-turn-helix transcriptional regulator -
  FORC60_RS22440 (FORC60_4410) recO 4233634..4234380 (-) 747 WP_000487009.1 DNA repair protein RecO Machinery gene
  FORC60_RS22445 (FORC60_4411) - 4234414..4234557 (-) 144 WP_000883924.1 YqzL family protein -
  FORC60_RS22450 (FORC60_4412) era 4234734..4235639 (-) 906 WP_001080230.1 GTPase Era -
  FORC60_RS22455 (FORC60_4413) - 4235632..4236030 (-) 399 WP_001086285.1 cytidine deaminase -
  FORC60_RS22460 (FORC60_4414) - 4236130..4236483 (-) 354 WP_000715466.1 diacylglycerol kinase family protein -
  FORC60_RS22465 (FORC60_4415) ybeY 4236480..4236950 (-) 471 WP_000054684.1 rRNA maturation RNase YbeY -
  FORC60_RS22470 (FORC60_4416) - 4236947..4239091 (-) 2145 WP_000091509.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28618.21 Da        Isoelectric Point: 8.0566

>NTDB_id=222026 FORC60_RS22440 WP_000487009.1 4233634..4234380(-) (recO) [Bacillus cereus strain FORC60]
MFQKVEGIVIRTTDYGETNKIVTIFSRELGKVSAMARGAKKPKSRLASVSQLMTHGHFLIQMGSGLGTLQQGEIISTMKE
IREDIFLTAYASFIVELTDKATEDKKHNPYLFEMLYQTLHYMCEGVDPEVLSLIYQTKMLPVLGMRPYFDTCAICHQETD
FVAFSVREGGFLCSRHAEQDPYRIPVGEAVHKLLRLFFHFDLHRLGNVSVKDSTKKQMRLVLNTYYDEYCGIYLKSRRFL
EQLDKFQI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=222026 FORC60_RS22440 WP_000487009.1 4233634..4234380(-) (recO) [Bacillus cereus strain FORC60]
ATGTTTCAAAAAGTTGAGGGCATCGTTATCCGTACGACAGATTACGGAGAAACGAACAAGATTGTTACAATATTCTCAAG
AGAACTTGGTAAGGTAAGTGCAATGGCAAGAGGGGCAAAAAAACCGAAAAGCCGATTAGCATCTGTGTCGCAATTAATGA
CACATGGCCATTTTCTAATTCAAATGGGATCTGGGCTTGGAACATTGCAACAAGGCGAGATTATTTCAACTATGAAAGAA
ATTCGCGAGGATATATTTTTAACTGCTTATGCATCATTTATTGTTGAGTTAACTGATAAAGCAACAGAAGATAAAAAACA
TAATCCGTATTTATTTGAAATGTTATATCAAACGTTGCATTATATGTGTGAGGGTGTTGATCCAGAAGTATTATCATTAA
TTTATCAAACGAAAATGCTTCCGGTATTAGGGATGCGCCCGTACTTTGATACATGTGCGATTTGTCATCAAGAAACAGAC
TTTGTCGCCTTCTCCGTTAGGGAAGGCGGTTTTCTGTGCTCACGTCATGCAGAGCAAGACCCATATCGTATACCGGTAGG
AGAAGCTGTTCATAAATTATTACGTCTTTTCTTCCATTTCGATTTACATAGGCTCGGAAATGTATCGGTAAAGGATAGCA
CAAAAAAACAAATGCGTTTAGTATTGAATACATATTATGATGAATATTGCGGAATTTATTTGAAATCAAGACGTTTTTTA
GAACAACTTGATAAGTTTCAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.466

99.597

0.552

Multiple sequence alignment