Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   C2H82_RS14620 Genome accession   NZ_CP026027
Coordinates   2797533..2798048 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain LIM     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2792533..2803048
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2H82_RS14585 alaE 2793378..2793827 (+) 450 WP_000492656.1 L-alanine exporter AlaE -
  C2H82_RS14590 ygaC 2793864..2794208 (-) 345 WP_000281320.1 DUF2002 family protein -
  C2H82_RS14595 ygaM 2794360..2794689 (+) 330 WP_001295174.1 DUF883 domain-containing protein -
  C2H82_RS14600 nrdH 2794937..2795182 (+) 246 WP_001223227.1 glutaredoxin-like protein NrdH -
  C2H82_RS14605 nrdI 2795179..2795589 (+) 411 WP_000080947.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  C2H82_RS24460 - 2795562..2797469 (+) 1908 WP_249823665.1 DHA2 family efflux MFS transporter permease subunit -
  C2H82_RS14620 luxS 2797533..2798048 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  C2H82_RS14625 gshA 2798198..2799754 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  C2H82_RS14630 yqaA 2799827..2800255 (-) 429 WP_001287454.1 YqaA family protein -
  C2H82_RS14635 yqaB 2800252..2800818 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  C2H82_RS14665 csrA 2802276..2802461 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=221861 C2H82_RS14620 WP_001130211.1 2797533..2798048(-) (luxS) [Escherichia coli strain LIM]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=221861 C2H82_RS14620 WP_001130211.1 2797533..2798048(-) (luxS) [Escherichia coli strain LIM]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731