Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   B5762_RS05235 Genome accession   NZ_CP020368
Coordinates   1008410..1009039 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain BLR(DE3)     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003410..1014039
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5762_RS05210 (B5762_01049) ycbZ 1003811..1005571 (-) 1761 WP_000156531.1 Lon protease family protein -
  B5762_RS05215 (B5762_01050) matP 1005757..1006209 (+) 453 WP_000877161.1 macrodomain Ter protein MatP -
  B5762_RS05220 (B5762_01051) ompA 1006285..1007325 (-) 1041 WP_000750416.1 porin OmpA -
  B5762_RS05230 (B5762_01053) sulA 1007682..1008191 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  B5762_RS05235 (B5762_01054) sxy/tfoX 1008410..1009039 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  B5762_RS05240 (B5762_01055) yccS 1009002..1011164 (-) 2163 WP_000875061.1 YccS family putative transporter -
  B5762_RS05245 (B5762_01056) yccF 1011174..1011620 (-) 447 WP_001261235.1 YccF domain-containing protein -
  B5762_RS05250 (B5762_01057) helD 1011743..1013797 (+) 2055 WP_001295354.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=221798 B5762_RS05235 WP_000839153.1 1008410..1009039(+) (sxy/tfoX) [Escherichia coli strain BLR(DE3)]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=221798 B5762_RS05235 WP_000839153.1 1008410..1009039(+) (sxy/tfoX) [Escherichia coli strain BLR(DE3)]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment