Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   BSK2_RS18040 Genome accession   NZ_CP020367
Coordinates   3507866..3509257 (-) Length   463 a.a.
NCBI ID   WP_080529868.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3502866..3514257
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS18005 (BSK2_18005) flgL 3503038..3503934 (-) 897 WP_015714797.1 flagellar hook-associated protein FlgL -
  BSK2_RS18010 (BSK2_18010) flgK 3503945..3505468 (-) 1524 WP_046160905.1 flagellar hook-associated protein FlgK -
  BSK2_RS18015 (BSK2_18015) flgN 3505487..3505969 (-) 483 WP_014481048.1 flagellar protein FlgN -
  BSK2_RS18020 (BSK2_18020) flgM 3505985..3506251 (-) 267 WP_015384783.1 flagellar biosynthesis anti-sigma factor FlgM -
  BSK2_RS18025 (BSK2_18025) yvyF 3506332..3506751 (-) 420 WP_038429728.1 TIGR03826 family flagellar region protein -
  BSK2_RS18030 (BSK2_18030) comFC 3506824..3507546 (-) 723 WP_128993465.1 comF operon protein ComFC Machinery gene
  BSK2_RS18035 (BSK2_18035) comFB 3507510..3507806 (-) 297 WP_015483764.1 late competence protein ComFB -
  BSK2_RS18040 (BSK2_18040) comFA 3507866..3509257 (-) 1392 WP_080529868.1 ATP-dependent helicase ComFA Machinery gene
  BSK2_RS18045 (BSK2_18045) fakBA 3509363..3510208 (-) 846 WP_003244125.1 DegV family protein -
  BSK2_RS18050 (BSK2_18050) degU 3510306..3510995 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  BSK2_RS18055 (BSK2_18055) degS 3511078..3512235 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  BSK2_RS18060 (BSK2_18060) yvyE 3512452..3513105 (+) 654 WP_003227979.1 YigZ family protein -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 52577.64 Da        Isoelectric Point: 10.0153

>NTDB_id=221785 BSK2_RS18040 WP_080529868.1 3507866..3509257(-) (comFA) [Bacillus subtilis strain GQJK2]
MNVPVEKNGSFSKELQQTLRSRHLLRTELSFSDEMIEWHIKNGYITAENSISINKRRYRCNRCGQTDQRYFSFYHSSGKN
KLYCRSCVMMGRVSEEVPLYSWKEENESNWKSIKLTWDGKLSSGQQKAANVLIEAISKKEELLIWAVCGAGKTEMLFPGI
ESALNQGLRVCIATPRTDVVLELAPRLKAAFQGADISALYGGSDDKGRLSPLMISTTHQLLRYKDAIDVMIIDEVDAFPY
SADQTLQFAVQKARKKNSTLVYLSATPPKELKRKALNGQLHSVRIPARHHRKPLPEPRFVWCGNWKKKLNRNKIPPAVKR
WIEFHIKEGRPVFLFVPSVSILEKAAACFRGVHCRTASVHAEDKHRKEKVQQFRDGQLDLLITTTILERGVTVPKVQTGV
LGAESSIFTESALVQIAGRTGRHKEYADGDVIYFHFGKTKSMLDARKHIKEMNELAAKVECTD

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=221785 BSK2_RS18040 WP_080529868.1 3507866..3509257(-) (comFA) [Bacillus subtilis strain GQJK2]
GTGAATGTGCCAGTTGAAAAAAACGGTTCCTTTTCAAAAGAATTGCAGCAGACGCTTCGAAGCCGTCATTTGCTCAGGAC
TGAGCTCTCATTTTCCGATGAGATGATTGAATGGCATATCAAGAATGGATATATCACTGCTGAAAATTCTATATCCATAA
ATAAACGGAGATATAGATGTAATAGGTGCGGACAAACTGATCAGCGGTATTTTTCTTTTTATCACTCATCTGGAAAGAAT
AAGCTGTATTGCCGTTCCTGTGTCATGATGGGCAGAGTGAGTGAGGAGGTTCCTTTATATTCATGGAAAGAGGAAAATGA
ATCAAACTGGAAGTCTATTAAGCTGACATGGGATGGCAAGCTTTCAAGCGGACAGCAAAAAGCCGCCAATGTTTTAATTG
AAGCAATATCAAAAAAAGAAGAGCTCCTCATCTGGGCGGTTTGCGGCGCTGGCAAAACAGAAATGCTGTTTCCTGGTATA
GAATCAGCGTTAAATCAAGGACTGCGTGTATGTATTGCAACACCTCGCACCGATGTTGTATTAGAGCTTGCTCCAAGACT
CAAGGCTGCCTTTCAGGGTGCTGACATTTCAGCGCTTTACGGAGGAAGCGATGACAAAGGGCGGCTATCTCCGCTTATGA
TTTCCACTACGCATCAGCTTTTGCGATATAAAGATGCAATCGATGTTATGATCATTGATGAAGTTGACGCTTTTCCATAT
TCTGCTGATCAAACCCTTCAATTCGCTGTTCAAAAAGCAAGAAAGAAAAACAGCACCCTCGTTTATTTAAGTGCAACACC
TCCTAAAGAATTAAAAAGAAAAGCACTGAACGGACAGTTACATTCAGTTCGCATCCCCGCAAGACACCACCGGAAACCTT
TACCCGAACCGCGCTTTGTATGGTGTGGAAACTGGAAGAAGAAATTAAACCGAAATAAAATTCCGCCAGCGGTGAAAAGA
TGGATAGAGTTTCATATAAAAGAAGGGAGGCCTGTTTTTTTATTCGTTCCTTCCGTTTCTATTCTGGAAAAGGCTGCTGC
GTGCTTTAGAGGTGTTCATTGCCGAACCGCATCTGTGCACGCGGAAGACAAGCATAGAAAGGAGAAAGTGCAGCAATTCA
GAGATGGTCAGCTCGATTTATTAATCACAACAACAATACTGGAAAGAGGCGTCACAGTCCCCAAGGTGCAAACGGGTGTA
CTAGGAGCGGAATCATCTATCTTTACGGAAAGCGCACTTGTTCAAATTGCAGGAAGAACCGGCCGGCATAAAGAATATGC
GGACGGCGATGTCATTTACTTTCACTTCGGCAAAACAAAGAGTATGCTCGATGCAAGAAAGCATATAAAAGAAATGAATG
AATTGGCAGCAAAAGTTGAATGTACAGACTAG

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(327-423)

Type III restriction enzyme, res subunit (ResIII)

(120-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

99.352

100

0.994

Multiple sequence alignment