Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   BSK2_RS11075 Genome accession   NZ_CP020367
Coordinates   2202606..2203226 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain GQJK2     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2197606..2208226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS11035 (BSK2_11035) ptsA 2198737..2199243 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  BSK2_RS11040 (BSK2_11040) ypqA 2199381..2199800 (+) 420 WP_080529461.1 Hsp20/alpha crystallin family protein -
  BSK2_RS11045 (BSK2_11045) sppG 2199821..2200198 (-) 378 WP_004398696.1 YppG family protein -
  BSK2_RS11050 (BSK2_11050) yppF 2200386..2200574 (+) 189 WP_003230690.1 YppF family protein -
  BSK2_RS11055 (BSK2_11055) yppE 2200613..2200984 (-) 372 WP_003246080.1 YppE family protein -
  BSK2_RS11060 (BSK2_11060) yppD 2201030..2201275 (-) 246 WP_004398488.1 YppD family protein -
  BSK2_RS11065 (BSK2_11065) sspM 2201474..2201578 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  BSK2_RS11070 (BSK2_11070) yppC 2201603..2202565 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  BSK2_RS11075 (BSK2_11075) recU 2202606..2203226 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  BSK2_RS11080 (BSK2_11080) ponA 2203248..2205998 (+) 2751 WP_080529463.1 PBP1A family penicillin-binding protein -
  BSK2_RS11085 (BSK2_11085) ypoC 2206074..2206568 (-) 495 WP_029726783.1 YpoC family protein -
  BSK2_RS11090 (BSK2_11090) nth 2206565..2207224 (-) 660 WP_080529464.1 endonuclease III -
  BSK2_RS11095 (BSK2_11095) dnaD 2207243..2207941 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=221754 BSK2_RS11075 WP_004399067.1 2202606..2203226(+) (recU) [Bacillus subtilis strain GQJK2]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=221754 BSK2_RS11075 WP_004399067.1 2202606..2203226(+) (recU) [Bacillus subtilis strain GQJK2]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment