Detailed information    

insolico Bioinformatically predicted

Overview


Name   abrB   Type   Regulator
Locus tag   BSK2_RS07810 Genome accession   NZ_CP020367
Coordinates   1495279..1495557 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain GQJK2     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context


Location: 1490279..1500557
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS07790 (BSK2_07790) panEB 1491467..1492378 (+) 912 WP_080529275.1 ketopantoate reductase family protein -
  BSK2_RS07795 (BSK2_07795) ampS 1492412..1493644 (-) 1233 WP_003232341.1 aminopeptidase -
  BSK2_RS07800 (BSK2_07800) ykpC 1493753..1493887 (-) 135 WP_003238865.1 protein YkpC -
  BSK2_RS07805 (BSK2_07805) mreBH 1493988..1494995 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  BSK2_RS07810 (BSK2_07810) abrB 1495279..1495557 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  BSK2_RS07815 (BSK2_07815) kinC 1495747..1497033 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  BSK2_RS07820 (BSK2_07820) ykqA 1497049..1497882 (+) 834 WP_015252173.1 gamma-glutamylcyclotransferase -
  BSK2_RS07825 (BSK2_07825) ktrC 1497945..1498610 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  BSK2_RS07830 (BSK2_07830) ade 1498766..1500499 (+) 1734 WP_080529276.1 adenine deaminase -

Sequence


Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=221749 BSK2_RS07810 WP_003244728.1 1495279..1495557(+) (abrB) [Bacillus subtilis strain GQJK2]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=221749 BSK2_RS07810 WP_003244728.1 1495279..1495557(+) (abrB) [Bacillus subtilis strain GQJK2]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576


Multiple sequence alignment