Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BSK2_RS05625 Genome accession   NZ_CP020367
Coordinates   1092081..1092659 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain GQJK2     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1087081..1097659
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS05605 (BSK2_05605) hemAT 1087592..1088890 (-) 1299 WP_080529143.1 heme-based aerotactic transducer HemAT -
  BSK2_RS05610 (BSK2_05610) comW 1089029..1090558 (-) 1530 WP_080529144.1 FAD-dependent oxidoreductase -
  BSK2_RS05615 (BSK2_05615) yhxC 1090670..1091527 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  BSK2_RS05620 (BSK2_05620) yhzC 1091555..1091788 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  BSK2_RS05625 (BSK2_05625) comK 1092081..1092659 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  BSK2_RS05630 (BSK2_05630) yhxD 1092706..1093605 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  BSK2_RS05635 (BSK2_05635) yhjA 1093822..1094091 (+) 270 WP_080529145.1 excalibur calcium-binding domain-containing protein -
  BSK2_RS05640 (BSK2_05640) yhjB 1094135..1095604 (-) 1470 WP_080529146.1 sodium:solute symporter -
  BSK2_RS05645 (BSK2_05645) yhjC 1095601..1095801 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  BSK2_RS05650 (BSK2_05650) - 1096000..1096371 (-) 372 WP_014476361.1 hypothetical protein -
  BSK2_RS05655 (BSK2_05655) yhjE 1096523..1097146 (+) 624 WP_010886465.1 VTT domain-containing protein -
  BSK2_RS05660 (BSK2_05660) lepB 1097148..1097654 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=221735 BSK2_RS05625 WP_003245329.1 1092081..1092659(+) (comK) [Bacillus subtilis strain GQJK2]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=221735 BSK2_RS05625 WP_003245329.1 1092081..1092659(+) (comK) [Bacillus subtilis strain GQJK2]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACATAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACCGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment