Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   BS11774_RS17730 Genome accession   NZ_CP026010
Coordinates   3337649..3339139 (-) Length   496 a.a.
NCBI ID   WP_017695904.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3332649..3344139
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS17700 (BS11774_17590) gudB 3332787..3334061 (-) 1275 WP_003230536.1 NAD-specific glutamate dehydrogenase -
  BS11774_RS17705 (BS11774_17595) mecB 3334217..3334801 (-) 585 WP_003230533.1 genetic competence negative regulator -
  BS11774_RS17710 (BS11774_17600) ypbG 3334960..3335739 (-) 780 WP_017695901.1 metallophosphoesterase -
  BS11774_RS17715 (BS11774_17605) ypbF 3335826..3336269 (-) 444 WP_042976400.1 YpbF family protein -
  BS11774_RS17720 (BS11774_17610) claE 3336332..3337069 (-) 738 WP_042976401.1 LysM peptidoglycan-binding domain-containing protein -
  BS11774_RS17725 (BS11774_17615) ypbD 3337020..3337622 (-) 603 WP_206659735.1 CPBP family intramembrane glutamic endopeptidase -
  BS11774_RS17730 (BS11774_17620) recS 3337649..3339139 (-) 1491 WP_017695904.1 ATP-dependent DNA helicase RecQ Machinery gene
  BS11774_RS17735 (BS11774_17625) gmmB 3339132..3340190 (-) 1059 WP_041053252.1 helix-turn-helix domain-containing protein -
  BS11774_RS17740 (BS11774_17630) fdxA 3340456..3340704 (+) 249 WP_003225461.1 ferredoxin -
  BS11774_RS17745 (BS11774_17635) fmnP 3340744..3341316 (-) 573 WP_029726755.1 riboflavin transporter FmnP -
  BS11774_RS17750 (BS11774_17640) serA 3341813..3343390 (+) 1578 WP_128474031.1 phosphoglycerate dehydrogenase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 56535.08 Da        Isoelectric Point: 6.3928

>NTDB_id=221706 BS11774_RS17730 WP_017695904.1 3337649..3339139(-) (recS) [Bacillus subtilis strain ATCC 11774]
MTKLQQTLYQFFGFTSFKKGQQDIIESILSGKDTIAMLPTGGGKSLCYQLPGYMLDGMVLIVSPLLSLMEDQVQQLKARG
EKRAAALNSMLNRQERQFVLEHIHRYKFLYLSPEALQSPYVLEKLKSVPISLFVIDEAHCISEWGHDFRPDYSKLGQLRK
KLGHPPVLALTATATKETLQDVMNLLELQHAVRHLNSVNRPNIALRVENAADTAEKIDRVIQLVENLQGPGIVYCPTRKW
AEELAGEIKSKTSSRADFYHGGLESGDRILIQQQFIHNQLDVICCTNAFGMGVDKPDIRYVIHFHLPQTAEAFMQEIGRA
GRDGKPSVSILLRAPGDFELQEQIIQMESVTAEEIADVIRVLEKTEERDERRLRDVLLQYGVGETQARMMIHLFMQGKTS
VELMKKEISYRMELKLEKMYRVSFLLQRDGCLRQALLTYFDESYEPDDGNLPCCSHCGFDLSLYEQKGERSKMAPLDSWS
SELHRIFSLQTVGELN

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=221706 BS11774_RS17730 WP_017695904.1 3337649..3339139(-) (recS) [Bacillus subtilis strain ATCC 11774]
ATGACTAAATTACAGCAAACGTTATATCAGTTTTTTGGTTTTACTTCCTTTAAAAAAGGGCAGCAGGACATTATTGAAAG
CATACTCAGCGGGAAGGATACCATTGCAATGCTCCCGACTGGGGGAGGGAAATCGCTTTGCTACCAGCTGCCTGGTTATA
TGCTTGACGGCATGGTATTAATCGTTTCTCCACTGCTTTCTTTAATGGAGGATCAGGTGCAGCAGCTCAAAGCCCGGGGG
GAAAAGCGTGCTGCAGCTTTGAACAGCATGCTTAACAGGCAGGAAAGACAATTTGTTTTAGAACATATTCATCGATATAA
ATTTTTGTACTTGTCTCCTGAAGCTTTACAGTCTCCATATGTATTGGAAAAATTGAAAAGCGTCCCGATCAGCCTATTTG
TTATTGACGAAGCGCATTGTATTTCTGAATGGGGACACGACTTCAGGCCTGATTATTCAAAGCTCGGACAGCTGAGAAAA
AAACTTGGTCACCCGCCCGTTCTGGCATTGACCGCCACGGCTACAAAGGAAACGCTGCAAGATGTCATGAACCTGCTGGA
GCTGCAGCATGCTGTACGCCATCTCAACTCAGTCAACCGCCCAAACATCGCACTGAGGGTTGAAAATGCGGCGGATACTG
CCGAAAAAATAGATAGGGTCATTCAGCTGGTTGAAAACCTGCAAGGTCCGGGAATTGTTTATTGTCCAACACGGAAATGG
GCCGAGGAATTAGCGGGTGAAATTAAAAGCAAAACGAGCAGCAGAGCCGACTTTTACCATGGCGGTTTGGAGTCAGGGGA
CAGGATTTTAATTCAGCAGCAGTTTATTCATAACCAGCTTGATGTGATATGTTGTACGAATGCGTTTGGAATGGGTGTCG
ATAAACCTGATATCAGATATGTAATTCATTTTCACCTCCCGCAGACGGCAGAAGCTTTTATGCAGGAAATCGGCAGAGCG
GGACGCGACGGAAAGCCGAGTGTCAGCATTTTGCTGCGGGCGCCAGGGGATTTTGAATTGCAGGAACAGATTATCCAGAT
GGAGAGTGTCACAGCTGAAGAAATCGCCGACGTAATCCGTGTGCTAGAGAAGACGGAGGAGCGGGATGAGAGAAGGCTGC
GTGACGTATTACTTCAGTATGGCGTAGGAGAGACACAGGCCCGTATGATGATTCATCTCTTTATGCAGGGAAAAACATCA
GTTGAACTGATGAAGAAAGAAATTTCATATCGCATGGAGCTGAAGCTGGAAAAAATGTACCGTGTATCATTTTTGCTTCA
GCGTGACGGCTGTTTAAGGCAGGCACTGTTAACCTACTTTGATGAATCATACGAGCCTGATGACGGAAACCTCCCGTGCT
GTTCACATTGCGGTTTTGATTTATCCTTGTATGAACAAAAAGGGGAACGGAGTAAAATGGCGCCATTAGACAGCTGGAGT
TCGGAATTGCACCGGATATTCAGCTTGCAGACTGTAGGTGAGCTGAACTGA

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(215-323)

DEAD/DEAH box helicase (DEAD)

(20-180)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996

Multiple sequence alignment