Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BLMD_RS18220 Genome accession   NZ_CP020352
Coordinates   3610064..3610345 (-) Length   93 a.a.
NCBI ID   WP_020452985.1    Uniprot ID   A0AAW6KAP3
Organism   Bacillus paralicheniformis strain MDJK30     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3605064..3615345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS18200 (BLMD_18200) smpB 3605876..3606349 (-) 474 WP_009329604.1 SsrA-binding protein SmpB -
  BLMD_RS18205 (BLMD_18205) rnr 3606465..3608768 (-) 2304 WP_020452983.1 ribonuclease R -
  BLMD_RS18210 (BLMD_18210) - 3608782..3609528 (-) 747 WP_020452984.1 alpha/beta hydrolase -
  BLMD_RS18215 (BLMD_18215) secG 3609669..3609899 (-) 231 WP_003185418.1 preprotein translocase subunit SecG -
  BLMD_RS18220 (BLMD_18220) abrB 3610064..3610345 (-) 282 WP_020452985.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BLMD_RS18225 (BLMD_18225) - 3610374..3610607 (-) 234 WP_164470226.1 helix-turn-helix domain-containing protein -
  BLMD_RS18230 (BLMD_18230) - 3610760..3611161 (+) 402 WP_020452987.1 transcriptional regulator -
  BLMD_RS18235 (BLMD_18235) - 3611334..3611732 (+) 399 WP_023856314.1 helix-turn-helix domain-containing protein -
  BLMD_RS18240 (BLMD_18240) - 3611781..3612458 (-) 678 WP_020452989.1 ABC transporter permease -
  BLMD_RS18245 (BLMD_18245) opuCC 3612475..3613392 (-) 918 WP_020452990.1 osmoprotectant ABC transporter substrate-binding lipoprotein OpuCC -
  BLMD_RS18250 (BLMD_18250) - 3613406..3614059 (-) 654 WP_020452991.1 ABC transporter permease -
  BLMD_RS18255 (BLMD_18255) - 3614081..3615220 (-) 1140 WP_020452992.1 betaine/proline/choline family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10358.19 Da        Isoelectric Point: 6.3182

>NTDB_id=221660 BLMD_RS18220 WP_020452985.1 3610064..3610345(-) (abrB) [Bacillus paralicheniformis strain MDJK30]
MKNTGIVRRIDELGRVVLPVEMRRVLNINEKDPLEIYTDGENIILTKYAANMACLMTGDITTKNKTYAGGKIVLSPRGAE
MLLEDMMAALSEK

Nucleotide


Download         Length: 282 bp        

>NTDB_id=221660 BLMD_RS18220 WP_020452985.1 3610064..3610345(-) (abrB) [Bacillus paralicheniformis strain MDJK30]
GTGAAAAATACGGGAATTGTCCGGAGAATCGATGAGCTCGGCAGAGTCGTTCTCCCGGTCGAAATGCGCAGGGTGCTGAA
TATCAATGAAAAGGACCCGCTCGAAATATACACCGACGGAGAAAACATCATTTTGACAAAATACGCCGCCAACATGGCAT
GCTTGATGACCGGCGACATCACCACCAAAAATAAAACGTATGCGGGCGGCAAAATCGTACTCAGCCCAAGGGGAGCAGAA
ATGCTGCTGGAAGATATGATGGCGGCCTTGTCAGAAAAATGA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-50)

AbrB C-terminal domain (AbrB_C)

(53-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

97.849

0.548

Multiple sequence alignment