Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   BS11774_RS09655 Genome accession   NZ_CP026010
Coordinates   1836424..1837548 (+) Length   374 a.a.
NCBI ID   WP_128473690.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1831424..1842548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS09635 (BS11774_09590) - 1831481..1832670 (+) 1190 Protein_1830 IS3 family transposase -
  BS11774_RS09640 (BS11774_09595) - 1832744..1833139 (-) 396 WP_048655144.1 immunity 22 family protein -
  BS11774_RS09645 (BS11774_09600) - 1833152..1835038 (-) 1887 WP_128473688.1 T7SS effector LXG polymorphic toxin -
  BS11774_RS09650 (BS11774_09605) - 1835249..1836262 (+) 1014 WP_128473689.1 hypothetical protein -
  BS11774_RS09655 (BS11774_09610) rapC 1836424..1837548 (+) 1125 WP_128473690.1 response regulator aspartate phosphatase RapH Regulator
  BS11774_RS09660 (BS11774_09615) phrH 1837538..1837717 (+) 180 WP_038428551.1 phosphatase RapH inhibitor PhrH -
  BS11774_RS09665 (BS11774_09620) yeeI 1837877..1838596 (+) 720 WP_003242611.1 YebC/PmpR family DNA-binding transcriptional regulator -
  BS11774_RS09670 (BS11774_09625) yeeK 1838730..1839146 (+) 417 WP_038427497.1 spore coat protein YeeK -
  BS11774_RS09675 (BS11774_09630) yezE 1839260..1839844 (+) 585 WP_128473691.1 TetR/AcrR family transcriptional regulator -
  BS11774_RS09680 (BS11774_09635) yesE 1839923..1840369 (+) 447 WP_032722988.1 nuclear transport factor 2 family protein -
  BS11774_RS09685 (BS11774_09640) yesF 1840366..1841228 (+) 863 Protein_1840 NAD-dependent epimerase/dehydratase family protein -
  BS11774_RS09690 (BS11774_09645) cotJA 1841358..1841606 (+) 249 WP_128473693.1 spore coat-associated protein CotJA -
  BS11774_RS09695 (BS11774_09650) cotJB 1841590..1841853 (+) 264 WP_003219491.1 spore coat protein CotJB -
  BS11774_RS09700 (BS11774_09655) cotJC 1841868..1842437 (+) 570 WP_003233850.1 spore coat protein CotJC -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 43778.13 Da        Isoelectric Point: 5.7616

>NTDB_id=221649 BS11774_RS09655 WP_128473690.1 1836424..1837548(+) (rapC) [Bacillus subtilis strain ATCC 11774]
MSQAIPSSRVGVKINEWYKMIRQFSVPDAEVLKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVT
ELLETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDEIEKAEFHFKVAEAYYHMKQTSMHHI
LQALDIYQKNPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLETALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH
FQKAAKVSREKVPDLLPKVLFGLCWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS
YFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDILKGECLYAY

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=221649 BS11774_RS09655 WP_128473690.1 1836424..1837548(+) (rapC) [Bacillus subtilis strain ATCC 11774]
TTGAGTCAAGCCATACCGTCTTCGCGTGTAGGTGTTAAGATTAATGAATGGTATAAAATGATTCGCCAGTTCAGTGTTCC
GGATGCTGAGGTTCTGAAAGCGGAGGTGGAGCAGGACATTCAGCAGATGGAAGAAGACCAGGATTTACTGATCTATTATT
CTCTGATGTGTTTTCGTCACCAGCTGATGCTGGATTATTTGGAGCCGGGAAAAACATACGGGAATCGCCCTACAGTGACA
GAGCTTCTTGAAACGATTGAGACCCCTCAGAAAAAACTCACAGGCCTTTTGAAATACTACTCTTTGTTTTTCCGCGGCAT
GTATGAATTTGATCAAAAAGAATATGTGGAAGCGATCGGGTATTATCGCGAGGCGGAGAAAGAACTGCCGTTTGTGTCAG
ATGAAATTGAGAAAGCGGAATTCCATTTTAAAGTGGCCGAAGCGTATTATCACATGAAGCAAACCTCGATGCATCATATT
CTTCAAGCCTTAGACATTTATCAAAAAAATCCCCTATACAGCATTAGAACGATACAAAGCTTGTTTGTGATCGCCGGCAA
CTATGATGATTTCAAACATTATGATAAAGCGCTCCCGCATTTAGAGACGGCGCTGGAATTGGCAATGGACATTCAAAATG
ACAGGTTTATCGCCATTTCTCTATTGAACATCGCGAACAGCTATGACAGATCAGGAGACGATCAGATGGCTGTAGAACAT
TTCCAAAAAGCGGCGAAAGTAAGCAGAGAGAAAGTGCCTGATCTGCTTCCGAAAGTCTTGTTTGGATTATGCTGGACATT
ATGTAAAGCGGGCCAAACACAGAAGGCGTTTCAGTTCATAGAGGAAGGATTAGACCATATCACAGCACGTTCTCACAAAT
TTTATAAAGAATTGTTTCTGTTCTTGCAGGCCGTGTACAAGGAGACTGTTGATGAACGAAAAATTCATGATCTTTTAAGC
TATTTCGAAAAAAAGAACCTGCACGCTTACATTGAAGCATGTGCCCGGAGTGCTGCCGCTGTTTTTGAAAGCAGCTGTCA
CTTTGAACAAGCCGCTGCGTTTTATCGGAAAGTGCTGAAAGCCCAAGAAGATATTCTAAAAGGAGAGTGTTTATATGCCT
ATTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_7)

(220-249)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

40.957

100

0.412
  rapF Bacillus subtilis subsp. subtilis str. 168

39.788

100

0.401

Multiple sequence alignment