Detailed information    

insolico Bioinformatically predicted

Overview

Name   lrpC   Type   Machinery gene
Locus tag   BS11774_RS08340 Genome accession   NZ_CP026010
Coordinates   1595642..1596076 (+) Length   144 a.a.
NCBI ID   WP_128473607.1    Uniprot ID   -
Organism   Bacillus subtilis strain ATCC 11774     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1590642..1601076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BS11774_RS08310 (BS11774_08270) ydaD 1591287..1592147 (+) 861 WP_042977133.1 SDR family oxidoreductase -
  BS11774_RS08315 (BS11774_08275) lyxE 1592163..1592666 (+) 504 WP_128473605.1 D-lyxose ketol-isomerase -
  BS11774_RS08320 (BS11774_08280) ydaF 1592755..1593306 (+) 552 WP_017697339.1 GNAT family protein -
  BS11774_RS08325 (BS11774_08285) ydaG 1593384..1593806 (+) 423 WP_003234396.1 pyridoxamine 5'-phosphate oxidase family protein -
  BS11774_RS08330 (BS11774_08290) amj 1594312..1595121 (+) 810 WP_128473606.1 lipid II flippase Amj -
  BS11774_RS08335 (BS11774_08295) ydzA 1595166..1595456 (-) 291 WP_015252794.1 DUF3817 domain-containing protein -
  BS11774_RS08340 (BS11774_08300) lrpC 1595642..1596076 (+) 435 WP_128473607.1 transcriptional regulator LrpC Machinery gene
  BS11774_RS08345 (BS11774_08305) topB 1596141..1598324 (+) 2184 WP_128473608.1 DNA topoisomerase III -
  BS11774_RS08350 (BS11774_08310) ephJ 1598528..1599616 (+) 1089 Protein_1590 lipoprotein YdaJ -
  BS11774_RS08355 (BS11774_08315) epsK 1599597..1600448 (+) 852 Protein_1591 cyclic-di-GMP receptor EpsK -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16391.99 Da        Isoelectric Point: 8.2359

>NTDB_id=221647 BS11774_RS08340 WP_128473607.1 1595642..1596076(+) (lrpC) [Bacillus subtilis strain ATCC 11774]
MKLDQIDLNIIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVKNADYER
FKSYIQTLPNIEFCYRIAGAACYMLKINAESLEAVEGFINKTSPYAQTVTHVIFSEIDTKNGRG

Nucleotide


Download         Length: 435 bp        

>NTDB_id=221647 BS11774_RS08340 WP_128473607.1 1595642..1596076(+) (lrpC) [Bacillus subtilis strain ATCC 11774]
ATGAAACTTGACCAGATTGATCTGAATATCATTGAGGAGCTGAAGAAGGACAGCCGTTTGTCGATGAGGGAATTAGGCAG
AAAAATTAAGCTGTCGCCTCCATCTGTAACAGAACGGGTAAGACAGCTTGAATCGTTTGGCATCATCAAGCAATACACGC
TGGAGGTCGACCAGAAAAAACTTGGGCTTCCCGTTTCCTGTATTGTGGAAGCAACCGTTAAAAACGCGGATTACGAGCGG
TTCAAAAGCTATATTCAAACATTGCCGAATATTGAATTTTGCTACCGGATTGCGGGTGCAGCCTGCTATATGCTGAAAAT
CAATGCCGAAAGCCTCGAAGCGGTAGAAGGTTTCATTAACAAAACATCGCCCTACGCGCAAACCGTCACTCACGTCATTT
TCTCAGAAATTGACACGAAAAACGGGCGCGGTTAG

Domains

Predicted by InterProScan.

Lrp/AsnC ligand binding domain (AsnC_trans_reg)

(70-135)

Winged helix-turn-helix DNA-binding (HTH_24)

(3-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lrpC Bacillus subtilis subsp. subtilis str. 168

99.306

100

0.993