Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   BLMD_RS13840 Genome accession   NZ_CP020352
Coordinates   2759929..2760699 (-) Length   256 a.a.
NCBI ID   WP_020452240.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2754929..2765699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS13820 (BLMD_13820) - 2755004..2755816 (-) 813 WP_020452237.1 pyruvate, water dikinase regulatory protein -
  BLMD_RS13825 (BLMD_13825) - 2755842..2756480 (-) 639 WP_025804968.1 helix-turn-helix transcriptional regulator -
  BLMD_RS13830 (BLMD_13830) glyS 2756678..2758717 (-) 2040 WP_020452238.1 glycine--tRNA ligase subunit beta -
  BLMD_RS13835 (BLMD_13835) glyQ 2758710..2759597 (-) 888 WP_020452239.1 glycine--tRNA ligase subunit alpha -
  BLMD_RS13840 (BLMD_13840) recO 2759929..2760699 (-) 771 WP_020452240.1 DNA repair protein RecO Machinery gene
  BLMD_RS13845 (BLMD_13845) - 2760737..2760880 (-) 144 WP_003183626.1 YqzL family protein -
  BLMD_RS13850 (BLMD_13850) era 2761042..2761947 (-) 906 WP_023855242.1 GTPase Era -
  BLMD_RS13855 (BLMD_13855) - 2761928..2762338 (-) 411 WP_020452242.1 cytidine deaminase -
  BLMD_RS13860 (BLMD_13860) - 2762471..2762851 (-) 381 WP_020452243.1 diacylglycerol kinase family protein -
  BLMD_RS13865 (BLMD_13865) ybeY 2762829..2763305 (-) 477 WP_020452244.1 rRNA maturation RNase YbeY -
  BLMD_RS13870 (BLMD_13870) - 2763302..2765356 (-) 2055 WP_229029921.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29527.17 Da        Isoelectric Point: 8.3124

>NTDB_id=221646 BLMD_RS13840 WP_020452240.1 2759929..2760699(-) (recO) [Bacillus paralicheniformis strain MDJK30]
MLTKCEGIVLRTNDYGETNKIITLLTREHGKIGVLARGAKKPNSRLSAISQPFLYASFLFRKSSGLGTLEQGEMIESMRH
IREDLFLTAYAAYITELIDKGTEEKKPNPFLFELLLQSMRRLDDGTDPDIIANLIEVKMLSVMGLYPELDECVHCKSKDG
TFHFSIRDNGFICHRCFAKDPYRIPLSPASARLLRLFFYFDLSRLGNVSVKQETKDELKRVIQTYYDEYSGIYLKSRRFM
EQMDNMKKMLGDENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=221646 BLMD_RS13840 WP_020452240.1 2759929..2760699(-) (recO) [Bacillus paralicheniformis strain MDJK30]
ATGCTGACGAAATGTGAAGGTATCGTCCTTCGTACAAACGACTATGGTGAAACAAATAAAATCATTACGCTGTTGACGAG
AGAACACGGGAAAATCGGTGTGCTGGCAAGGGGCGCCAAAAAGCCGAACAGCCGCTTGTCAGCGATTTCCCAGCCGTTCC
TTTATGCTTCTTTTTTATTCCGCAAATCATCCGGTCTCGGCACATTGGAGCAGGGCGAGATGATCGAAAGCATGAGGCAT
ATACGCGAGGATCTGTTTTTAACAGCATACGCGGCCTACATCACTGAATTAATCGACAAGGGAACGGAGGAAAAGAAACC
GAATCCGTTTTTATTTGAGCTGCTTCTTCAGTCGATGAGGAGGCTCGATGACGGTACAGATCCCGACATTATCGCCAACC
TTATCGAAGTTAAAATGCTCAGCGTGATGGGGCTGTATCCGGAGCTGGATGAATGTGTACACTGCAAAAGCAAAGACGGC
ACATTTCATTTTTCGATCCGCGACAACGGCTTTATCTGCCACCGCTGTTTTGCGAAAGATCCATACAGGATACCGCTGTC
TCCCGCATCCGCCAGGCTGTTGAGGCTGTTTTTTTATTTTGATCTGTCAAGGCTCGGAAATGTCTCGGTTAAACAGGAGA
CGAAGGATGAGCTGAAAAGGGTCATTCAGACGTATTATGACGAGTACTCAGGGATCTACCTGAAATCGCGGCGCTTCATG
GAACAAATGGACAATATGAAAAAGATGCTGGGCGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

77.344

100

0.773

Multiple sequence alignment