Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BLMD_RS10110 Genome accession   NZ_CP020352
Coordinates   1993233..1993709 (+) Length   158 a.a.
NCBI ID   WP_026579660.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1988233..1998709
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS10080 (BLMD_10080) - 1989352..1990329 (+) 978 WP_020451563.1 alpha/beta hydrolase family protein -
  BLMD_RS10085 (BLMD_10085) - 1990390..1990617 (+) 228 WP_023857612.1 hypothetical protein -
  BLMD_RS10095 (BLMD_10095) - 1991313..1991909 (+) 597 WP_020451565.1 SAM-dependent methyltransferase -
  BLMD_RS10100 (BLMD_10100) - 1992015..1992497 (+) 483 WP_035338646.1 DUF4944 domain-containing protein -
  BLMD_RS10105 (BLMD_10105) - 1992531..1993102 (+) 572 Protein_1944 N-acetyltransferase family protein -
  BLMD_RS10110 (BLMD_10110) rok 1993233..1993709 (+) 477 WP_026579660.1 hypothetical protein Regulator
  BLMD_RS22110 - 1993828..1994001 (+) 174 WP_020451569.1 hypothetical protein -
  BLMD_RS10115 (BLMD_10115) - 1994354..1994974 (-) 621 WP_020451570.1 hypothetical protein -
  BLMD_RS10120 (BLMD_10120) - 1995535..1996119 (+) 585 WP_020451571.1 TetR family transcriptional regulator -
  BLMD_RS10125 (BLMD_10125) - 1996200..1996532 (+) 333 WP_020451572.1 DMT family transporter -
  BLMD_RS10130 (BLMD_10130) - 1996535..1996852 (+) 318 WP_020451573.1 DMT family transporter -
  BLMD_RS10135 (BLMD_10135) speG 1996881..1997423 (+) 543 WP_020451574.1 spermidine N1-acetyltransferase -
  BLMD_RS10140 (BLMD_10140) - 1997460..1997816 (-) 357 WP_035338648.1 YxeA family protein -
  BLMD_RS10145 (BLMD_10145) - 1997996..1998436 (+) 441 WP_023857604.1 hypothetical protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18313.17 Da        Isoelectric Point: 10.0055

>NTDB_id=221636 BLMD_RS10110 WP_026579660.1 1993233..1993709(+) (rok) [Bacillus paralicheniformis strain MDJK30]
MFDEREALRLRLEQLGDAEIQVMRELRKERQDIYSKLRELDRESDPAINKKSSLIDLASAAAEELKQSQIAADKHPPIKT
PSHTIFQSKTTIQREAALNILSRYEEGLKGIKLKTEIEKETGFPIKNMTTFMKSLMKHRPDIKKPARGHYILQKEKDL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=221636 BLMD_RS10110 WP_026579660.1 1993233..1993709(+) (rok) [Bacillus paralicheniformis strain MDJK30]
ATGTTCGACGAAAGAGAAGCGTTGCGTTTGAGACTTGAACAGCTAGGTGATGCGGAGATTCAGGTGATGCGGGAATTGCG
AAAAGAACGACAGGACATTTATTCGAAGCTGCGTGAATTGGACCGGGAGAGTGATCCCGCAATTAACAAAAAATCTTCAT
TGATCGACTTGGCAAGCGCTGCAGCAGAGGAATTAAAACAATCCCAAATTGCCGCTGACAAACATCCGCCCATCAAGACT
CCATCTCATACTATTTTCCAATCAAAAACAACCATACAGCGCGAGGCTGCCTTAAACATTTTAAGCCGCTATGAAGAGGG
CTTGAAAGGCATTAAGCTCAAAACTGAAATCGAGAAAGAAACCGGCTTTCCGATTAAAAACATGACGACATTTATGAAGA
GCTTAATGAAACATCGCCCAGATATTAAAAAGCCTGCCCGCGGCCATTATATTTTGCAAAAAGAAAAAGACCTTTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

43.407

100

0.5

Multiple sequence alignment