Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   BLMD_RS08130 Genome accession   NZ_CP020352
Coordinates   1607363..1607950 (+) Length   195 a.a.
NCBI ID   WP_020451209.1    Uniprot ID   A0A6I7TW81
Organism   Bacillus paralicheniformis strain MDJK30     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1602363..1612950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS08100 (BLMD_08100) - 1602659..1603111 (+) 453 WP_020451204.1 flavodoxin -
  BLMD_RS08105 (BLMD_08105) dapD 1603218..1603928 (+) 711 WP_020451205.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  BLMD_RS08110 (BLMD_08110) - 1603998..1605122 (+) 1125 WP_020451206.1 N-acetyldiaminopimelate deacetylase -
  BLMD_RS08115 (BLMD_08115) - 1605185..1605430 (+) 246 WP_003181323.1 YkuS family protein -
  BLMD_RS08120 (BLMD_08120) ahpA 1605726..1606268 (+) 543 WP_020451207.1 biofilm-specific peroxidase AhpA -
  BLMD_RS08125 (BLMD_08125) - 1606358..1606816 (+) 459 WP_020451208.1 redoxin domain-containing protein -
  BLMD_RS08130 (BLMD_08130) rok 1607363..1607950 (+) 588 WP_020451209.1 transcriptional regulator Rok Regulator
  BLMD_RS08135 (BLMD_08135) - 1608095..1609051 (-) 957 WP_020451210.1 sporulation protein YknT -
  BLMD_RS08140 (BLMD_08140) - 1609204..1609791 (+) 588 WP_020451211.1 molybdenum cofactor guanylyltransferase -
  BLMD_RS08145 (BLMD_08145) - 1609897..1610910 (+) 1014 WP_020451212.1 molybdopterin-synthase adenylyltransferase MoeB -
  BLMD_RS08150 (BLMD_08150) glp 1610929..1612221 (+) 1293 WP_020451213.1 gephyrin-like molybdotransferase Glp -
  BLMD_RS08155 (BLMD_08155) mobB 1612188..1612715 (+) 528 WP_020451214.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 22537.49 Da        Isoelectric Point: 9.9960

>NTDB_id=221630 BLMD_RS08130 WP_020451209.1 1607363..1607950(+) (rok) [Bacillus paralicheniformis strain MDJK30]
MFNEREALRLRLEQLNEAEVKVIREYQIERDNIYAKLRELDRPSSFNDTKKDFRPERKTESLPVLAELAAQEMKSYQQQQ
QQPQASQKNQQQTSPQTSSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGEISTETEQQ

Nucleotide


Download         Length: 588 bp        

>NTDB_id=221630 BLMD_RS08130 WP_020451209.1 1607363..1607950(+) (rok) [Bacillus paralicheniformis strain MDJK30]
ATGTTTAACGAGAGGGAAGCATTGCGTTTAAGATTGGAGCAGCTGAATGAGGCTGAGGTTAAGGTGATTAGGGAGTATCA
AATTGAGCGGGATAATATATATGCAAAGCTGCGTGAATTGGATCGTCCATCCAGCTTTAATGATACAAAAAAAGATTTTC
GCCCGGAGCGTAAAACGGAATCTCTCCCTGTTTTAGCTGAATTAGCTGCGCAGGAGATGAAGAGCTATCAGCAACAACAG
CAGCAGCCGCAAGCATCTCAAAAGAACCAGCAGCAGACTTCTCCGCAAACCTCCTCACTGCCTGCCGGAATTCCAGATGG
AACGACAAGGCGCAGAAGGGGTACAGCACGTCCAGGCTCAAAAGCTGCAAAACTGCGTGAAGCGGCGATTAAAACATTAA
AACGCCATAATGCGGCCATCAAAAGCTCCGAACTTCAAAAAGAAATCGAAAAAGAGAGCGGACTTGAGATCCCTAATATG
ACAACCTTTATGCAAAGCCTGATTAAAATGTACCCGGAAGTCAAAAAACCATACCGCGGTCAATATATATTAGAGGGTGA
GATTTCTACCGAGACAGAGCAGCAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6I7TW81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

83.684

97.436

0.815

Multiple sequence alignment