Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   BLMD_RS05995 Genome accession   NZ_CP020352
Coordinates   1193364..1193942 (+) Length   192 a.a.
NCBI ID   WP_020450829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1188364..1198942
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS22680 - 1188862..1189368 (-) 507 WP_370510583.1 methyl-accepting chemotaxis protein -
  BLMD_RS22685 - 1189621..1190154 (-) 534 Protein_1117 protoglobin family protein -
  BLMD_RS05980 (BLMD_05980) - 1190261..1191811 (-) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  BLMD_RS05985 (BLMD_05985) - 1191932..1192789 (+) 858 WP_020450827.1 SDR family oxidoreductase -
  BLMD_RS05990 (BLMD_05990) - 1192858..1193091 (-) 234 WP_020450828.1 IDEAL domain-containing protein -
  BLMD_RS05995 (BLMD_05995) comK 1193364..1193942 (+) 579 WP_020450829.1 competence protein ComK Regulator
  BLMD_RS06000 (BLMD_06000) - 1193936..1194301 (-) 366 WP_020450830.1 hypothetical protein -
  BLMD_RS06005 (BLMD_06005) - 1194509..1195120 (+) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  BLMD_RS06010 (BLMD_06010) lepB 1195133..1195651 (+) 519 WP_020450832.1 signal peptidase I -
  BLMD_RS06020 (BLMD_06020) - 1195780..1197555 (-) 1776 WP_020450833.1 S8 family peptidase -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.61 Da        Isoelectric Point: 8.2478

>NTDB_id=221617 BLMD_RS05995 WP_020450829.1 1193364..1193942(+) (comK) [Bacillus paralicheniformis strain MDJK30]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=221617 BLMD_RS05995 WP_020450829.1 1193364..1193942(+) (comK) [Bacillus paralicheniformis strain MDJK30]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment