Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   BLMD_RS04735 Genome accession   NZ_CP020352
Coordinates   958847..959638 (+) Length   263 a.a.
NCBI ID   WP_080131560.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 953847..964638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS04705 (BLMD_04705) - 955027..955923 (+) 897 WP_035339170.1 PhzF family phenazine biosynthesis isomerase -
  BLMD_RS04710 (BLMD_04710) - 956026..956604 (+) 579 WP_023856444.1 nitroreductase -
  BLMD_RS04715 (BLMD_04715) - 956638..956832 (-) 195 WP_020450618.1 YfhD family protein -
  BLMD_RS04720 (BLMD_04720) - 956901..957014 (-) 114 WP_023856002.1 YfhE family protein -
  BLMD_RS04725 (BLMD_04725) - 957082..957612 (-) 531 WP_020450619.1 GNAT family N-acetyltransferase -
  BLMD_RS04730 (BLMD_04730) - 957879..958778 (-) 900 WP_023856001.1 TIGR01777 family oxidoreductase -
  BLMD_RS04735 (BLMD_04735) recX 958847..959638 (+) 792 WP_080131560.1 recombination regulator RecX Regulator
  BLMD_RS04740 (BLMD_04740) - 959643..959957 (+) 315 WP_003179919.1 YfhH family protein -
  BLMD_RS04745 (BLMD_04745) - 959987..960157 (-) 171 WP_003179922.1 YpzG family protein -
  BLMD_RS04750 (BLMD_04750) - 960184..960333 (-) 150 WP_003179924.1 small, acid-soluble spore protein K -
  BLMD_RS04755 (BLMD_04755) - 960464..960733 (+) 270 WP_020450622.1 YfhJ family protein -
  BLMD_RS21865 - 960916..961122 (+) 207 WP_155121652.1 hypothetical protein -
  BLMD_RS04760 (BLMD_04760) - 961474..962433 (+) 960 WP_020450623.1 glycosyltransferase family 2 protein -
  BLMD_RS04765 (BLMD_04765) - 962402..962803 (+) 402 WP_020450624.1 GtrA family protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30334.62 Da        Isoelectric Point: 7.0673

>NTDB_id=221612 BLMD_RS04735 WP_080131560.1 958847..959638(+) (recX) [Bacillus paralicheniformis strain MDJK30]
MPYITKISAQKNNEERVNIFLDEKYAFSVDLDVLVKFDLRKGKELDELDIIEIQYGDDVKKGFKKALDYLSYRMRSTKEV
KDHLKKKDVADSAITEILHMLKGYKYLDDREFAAAYVSTHRKTSGKGPDVLFRELKLKGIDDELIQEALSSFSFSDQVEA
AVKHAEKVLKKEKKLSSKVTKQAIEQHLVRKGFSFDVISAALQETDYENDDSAEREALEKQGEKAMKRCGYDGSYETKMK
VKQHLFRKGFSIDMIDQFLDEKG

Nucleotide


Download         Length: 792 bp        

>NTDB_id=221612 BLMD_RS04735 WP_080131560.1 958847..959638(+) (recX) [Bacillus paralicheniformis strain MDJK30]
ATGCCATATATTACAAAGATTTCTGCCCAGAAAAACAATGAAGAGCGGGTCAATATTTTTCTGGATGAAAAGTATGCGTT
CAGCGTCGACCTGGACGTGCTCGTCAAGTTTGACCTGCGAAAAGGCAAAGAGCTTGATGAGCTTGATATCATTGAGATTC
AGTACGGAGACGACGTTAAAAAAGGGTTCAAAAAAGCGCTCGATTATTTGTCATACCGGATGCGCTCGACAAAGGAAGTC
AAAGACCATCTCAAGAAAAAAGACGTCGCAGACTCCGCGATCACAGAAATCCTGCATATGCTTAAAGGTTATAAATATTT
GGACGACCGCGAATTTGCGGCTGCATATGTCAGCACCCACAGAAAAACGAGCGGCAAAGGCCCCGATGTCCTATTCAGAG
AGCTTAAATTGAAAGGGATCGATGATGAACTGATTCAGGAAGCGCTCAGTTCGTTTTCGTTTTCCGATCAGGTCGAGGCC
GCGGTCAAGCATGCGGAAAAAGTGCTGAAAAAAGAAAAAAAGCTGTCCTCCAAAGTTACGAAACAGGCCATCGAACAGCA
CCTTGTCAGAAAGGGGTTCTCCTTCGATGTCATCTCGGCCGCGCTTCAGGAAACGGATTACGAAAACGACGACAGCGCAG
AAAGGGAAGCGCTTGAGAAGCAAGGGGAAAAAGCGATGAAGAGGTGCGGTTATGACGGATCATACGAAACGAAAATGAAG
GTCAAACAGCATCTGTTCAGAAAAGGCTTTTCAATCGACATGATTGATCAATTTTTAGATGAAAAGGGATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

70.115

99.24

0.696

Multiple sequence alignment