Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   BLMD_RS02140 Genome accession   NZ_CP020352
Coordinates   391310..391708 (-) Length   132 a.a.
NCBI ID   WP_080131221.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain MDJK30     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 386310..396708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BLMD_RS21825 - 386326..386487 (+) 162 WP_155121650.1 hypothetical protein -
  BLMD_RS02115 (BLMD_02115) - 386646..387329 (-) 684 WP_075753811.1 amino acid ABC transporter permease -
  BLMD_RS02120 (BLMD_02120) - 387341..388189 (-) 849 WP_196220020.1 transporter substrate-binding domain-containing protein -
  BLMD_RS02125 (BLMD_02125) - 388401..388952 (+) 552 WP_080131218.1 NAD(P)H-dependent oxidoreductase -
  BLMD_RS02130 (BLMD_02130) - 389038..389763 (+) 726 WP_080131219.1 AAA family ATPase -
  BLMD_RS02135 (BLMD_02135) - 389833..391269 (+) 1437 WP_080131220.1 glycoside hydrolase family 1 protein -
  BLMD_RS02140 (BLMD_02140) nin/comJ 391310..391708 (-) 399 WP_080131221.1 competence protein ComJ Regulator
  BLMD_RS02145 (BLMD_02145) nucA/comI 391726..392172 (-) 447 WP_080131222.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  BLMD_RS02155 (BLMD_02155) - 392649..393452 (+) 804 WP_080131224.1 serine/threonine protein kinase -
  BLMD_RS02160 (BLMD_02160) - 393472..395175 (-) 1704 WP_080131225.1 methyl-accepting chemotaxis protein -
  BLMD_RS02165 (BLMD_02165) - 395293..396033 (-) 741 WP_080131226.1 ribonuclease YeeF family protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 15047.04 Da        Isoelectric Point: 5.1599

>NTDB_id=221608 BLMD_RS02140 WP_080131221.1 391310..391708(-) (nin/comJ) [Bacillus paralicheniformis strain MDJK30]
MIKKWEAQEMTMSYHQFTVYQKGGKPPVMDWTDEDMKRGYTTGEHAVSFEALDNTSSLVEVRLNVQEQVPSFNRRVTVSF
DVLHDGVEIASVLSKKLSCDIPQGVYQLTCYTITPDQNSTAKITYILDFKQA

Nucleotide


Download         Length: 399 bp        

>NTDB_id=221608 BLMD_RS02140 WP_080131221.1 391310..391708(-) (nin/comJ) [Bacillus paralicheniformis strain MDJK30]
TTGATCAAAAAGTGGGAAGCACAAGAAATGACGATGTCATACCATCAGTTTACCGTTTATCAAAAAGGCGGAAAGCCGCC
CGTTATGGATTGGACAGACGAGGATATGAAAAGAGGCTACACAACGGGAGAACACGCGGTCTCGTTTGAAGCTCTCGATA
ATACCTCATCTTTAGTAGAAGTCCGTTTGAATGTCCAGGAACAGGTTCCCTCCTTTAACAGGCGCGTCACCGTCTCTTTC
GACGTGCTTCATGACGGGGTCGAAATTGCAAGCGTCCTATCCAAGAAATTGTCATGCGACATCCCGCAAGGCGTCTATCA
GCTGACATGCTATACGATAACGCCTGATCAAAACAGCACTGCAAAGATCACCTATATTCTCGATTTTAAACAGGCCTGA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

50

96.97

0.485

Multiple sequence alignment