Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | BLMD_RS00265 | Genome accession | NZ_CP020352 |
| Coordinates | 48755..49045 (-) | Length | 96 a.a. |
| NCBI ID | WP_085959887.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain MDJK30 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 43755..54045
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BLMD_RS00225 (BLMD_00225) | - | 43778..44107 (+) | 330 | WP_003178156.1 | cyclic-di-AMP receptor | - |
| BLMD_RS00230 (BLMD_00230) | - | 44119..44559 (+) | 441 | WP_020449792.1 | YaaR family protein | - |
| BLMD_RS00235 (BLMD_00235) | holB | 44571..45560 (+) | 990 | WP_020449793.1 | DNA polymerase III subunit delta' | - |
| BLMD_RS00240 (BLMD_00240) | - | 45563..46390 (+) | 828 | WP_020449794.1 | stage 0 sporulation family protein | - |
| BLMD_RS00245 (BLMD_00245) | yabA | 46405..46767 (+) | 363 | WP_020449795.1 | DNA replication initiation control protein YabA | - |
| BLMD_RS00250 (BLMD_00250) | - | 46832..47575 (+) | 744 | WP_020449796.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| BLMD_RS00255 (BLMD_00255) | - | 47562..47855 (+) | 294 | WP_020449797.1 | GIY-YIG nuclease family protein | - |
| BLMD_RS00260 (BLMD_00260) | rsmI | 47830..48705 (+) | 876 | WP_041817399.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| BLMD_RS00265 (BLMD_00265) | abrB | 48755..49045 (-) | 291 | WP_085959887.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| BLMD_RS00270 (BLMD_00270) | metG | 49553..51541 (+) | 1989 | WP_020449799.1 | methionine--tRNA ligase | - |
| BLMD_RS00275 (BLMD_00275) | - | 51625..52392 (+) | 768 | WP_020449800.1 | TatD family hydrolase | - |
| BLMD_RS00280 (BLMD_00280) | - | 52637..53833 (+) | 1197 | WP_020449801.1 | G5 and 3D domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10680.43 Da Isoelectric Point: 5.1848
>NTDB_id=221604 BLMD_RS00265 WP_085959887.1 48755..49045(-) (abrB) [Bacillus paralicheniformis strain MDJK30]
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
MNMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSPEG
AEQIINEIQAQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=221604 BLMD_RS00265 WP_085959887.1 48755..49045(-) (abrB) [Bacillus paralicheniformis strain MDJK30]
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
ATGAATATGAAATCTACAGGTATTGTACGTAAAGTTGATGAGCTAGGACGCGTGGTGATTCCGATCGAACTTCGCCGTAC
GCTTGGAATCGCGGAAAAAGACGCTCTTGAAATCTATGTAGATGACGAAAAAATCATCTTGAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTTTCTGATGACAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGCCCTGAAGGC
GCTGAGCAAATCATTAACGAAATTCAAGCACAACTTCAATCTCAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |