Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CYK57_RS06865 Genome accession   NZ_CP026009
Coordinates   1503060..1503569 (-) Length   169 a.a.
NCBI ID   WP_005598178.1    Uniprot ID   A3N1L8
Organism   Actinobacillus pleuropneumoniae strain App6     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1498060..1508569
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK57_RS06840 (CYK57_01398) tehA 1498526..1499476 (-) 951 WP_005617701.1 dicarboxylate transporter/tellurite-resistance protein TehA -
  CYK57_RS06845 (CYK57_01399) hxpB 1499572..1500222 (-) 651 WP_011848549.1 hexitol phosphatase HxpB -
  CYK57_RS06855 (CYK57_01400) - 1500460..1501023 (-) 564 WP_005604973.1 flavin reductase family protein -
  CYK57_RS06860 (CYK57_01401) - 1501110..1502954 (-) 1845 WP_009874807.1 ABC transporter ATP-binding protein -
  CYK57_RS06865 (CYK57_01402) luxS 1503060..1503569 (-) 510 WP_005598178.1 S-ribosylhomocysteine lyase Regulator
  CYK57_RS06870 (CYK57_01403) - 1503624..1506290 (-) 2667 WP_005617705.1 MlaD family protein -
  CYK57_RS06875 (CYK57_01404) fur 1506438..1506887 (-) 450 WP_005612673.1 ferric iron uptake transcriptional regulator -
  CYK57_RS06880 (CYK57_01405) fldA 1506916..1507440 (-) 525 WP_005598185.1 flavodoxin FldA -
  CYK57_RS06885 (CYK57_01406) ybfE 1507462..1507746 (-) 285 WP_005620439.1 LexA regulated protein -
  CYK57_RS06890 (CYK57_01407) ybaK 1507955..1508431 (-) 477 WP_005604978.1 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18869.63 Da        Isoelectric Point: 5.2621

>NTDB_id=221577 CYK57_RS06865 WP_005598178.1 1503060..1503569(-) (luxS) [Actinobacillus pleuropneumoniae strain App6]
MPLLDSFKVDHTRMNAPAVRVAKTMTTPKGDTITVFDLRFCRPNIDILPVRGIHTMEHLFAGFMRDHLNSESVEIIDISP
MGCRTGFYMSLIGAPSEADVVSAWTKSMEDALNKVPDVSKIPELNEYQCGSYKEHSLEEAHQIARDVLAKGIGVNRNEDL
ALDEKLLNP

Nucleotide


Download         Length: 510 bp        

>NTDB_id=221577 CYK57_RS06865 WP_005598178.1 1503060..1503569(-) (luxS) [Actinobacillus pleuropneumoniae strain App6]
ATGCCTTTATTAGATAGCTTTAAAGTGGATCACACTCGTATGAACGCACCGGCAGTGCGTGTTGCAAAAACGATGACGAC
GCCGAAGGGCGATACGATTACCGTATTCGATTTACGTTTTTGCCGTCCGAATATTGATATTTTACCGGTGCGTGGTATCC
ACACGATGGAACACTTATTTGCCGGCTTTATGCGTGATCATTTAAATAGTGAAAGTGTAGAAATTATTGATATTTCGCCG
ATGGGTTGCCGTACCGGTTTCTATATGTCGTTAATCGGTGCGCCAAGCGAAGCGGATGTGGTTTCGGCGTGGACAAAATC
GATGGAAGATGCTTTAAATAAAGTACCGGACGTGTCAAAAATTCCGGAATTAAACGAATATCAATGCGGCTCTTATAAAG
AGCATTCGCTTGAAGAAGCGCATCAAATCGCTCGTGATGTGTTAGCCAAGGGTATCGGCGTAAACCGTAACGAAGATTTA
GCGCTTGATGAGAAATTATTAAATCCATAA

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-153)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1L8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.214

99.408

0.728

Multiple sequence alignment