Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   CYK57_RS06295 Genome accession   NZ_CP026009
Coordinates   1389397..1390029 (+) Length   210 a.a.
NCBI ID   WP_005608326.1    Uniprot ID   A3N1B4
Organism   Actinobacillus pleuropneumoniae strain App6     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1384397..1395029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK57_RS06285 (CYK57_01281) purT 1385462..1386643 (-) 1182 WP_005597983.1 formate-dependent phosphoribosylglycinamide formyltransferase -
  CYK57_RS06290 (CYK57_01282) plsB 1386766..1389240 (-) 2475 WP_009875486.1 glycerol-3-phosphate 1-O-acyltransferase PlsB -
  CYK57_RS06295 (CYK57_01283) dinR/lexA 1389397..1390029 (+) 633 WP_005608326.1 transcriptional repressor LexA Regulator
  CYK57_RS06300 (CYK57_01284) mutH 1390089..1390769 (+) 681 WP_009875487.1 DNA mismatch repair endonuclease MutH -
  CYK57_RS06305 (CYK57_01285) - 1390855..1391586 (+) 732 WP_005597990.1 TerC family protein -
  CYK57_RS06310 (CYK57_01286) nagZ 1391701..1392738 (+) 1038 WP_011848533.1 beta-N-acetylhexosaminidase -
  CYK57_RS06315 (CYK57_01287) rlmC 1392819..1393994 (+) 1176 WP_009875490.1 23S rRNA (uracil(747)-C(5))-methyltransferase RlmC -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23368.76 Da        Isoelectric Point: 5.8460

>NTDB_id=221574 CYK57_RS06295 WP_005608326.1 1389397..1390029(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain App6]
MSRKHLTARQQEIFDFVKHHIETTGMPPTRVEIAREIGFKSPNAAEEHLKALARKGYIEMLSGTSRGIRILVDNEETAAN
DDGLPLIGKVAAGTPIMAIEHVESHYPVNGAMFNPNADYLLKVNGNSMEKIGILDGDLLAVHKTNFARNGQVVVARVDDE
VTVKRLEKKGDLIYLHPENDELQPIIVDPRIEYIEIEGIAVGVIRNNAWM

Nucleotide


Download         Length: 633 bp        

>NTDB_id=221574 CYK57_RS06295 WP_005608326.1 1389397..1390029(+) (dinR/lexA) [Actinobacillus pleuropneumoniae strain App6]
ATGTCACGTAAACACTTAACGGCTCGTCAGCAAGAAATTTTTGATTTTGTTAAACATCACATAGAAACCACCGGTATGCC
GCCGACCCGTGTTGAAATTGCAAGAGAAATCGGTTTTAAATCGCCGAATGCGGCAGAAGAACACTTAAAAGCATTGGCGC
GTAAAGGTTATATCGAAATGCTTTCCGGTACATCGCGCGGAATTCGTATTTTAGTCGATAACGAAGAAACTGCGGCAAAT
GACGATGGTTTACCGTTAATCGGCAAAGTGGCTGCCGGTACGCCGATTATGGCGATTGAACATGTGGAAAGTCATTATCC
GGTAAACGGCGCGATGTTTAATCCGAATGCCGACTATTTGCTCAAAGTAAACGGTAACTCCATGGAAAAAATCGGTATTT
TAGACGGTGACTTACTTGCGGTGCATAAAACCAATTTTGCCCGTAACGGCCAAGTCGTCGTCGCTCGCGTTGATGACGAA
GTGACCGTAAAACGCTTGGAGAAAAAAGGCGATCTTATTTATCTTCATCCTGAAAATGACGAGTTACAACCGATTATTGT
CGATCCTCGTATCGAATATATCGAAATTGAAGGAATCGCCGTCGGTGTAATTCGCAATAACGCTTGGATGTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-200)

LexA DNA binding domain (LexA_DNA_bind)

(4-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3N1B4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

37.864

98.095

0.371