Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CYK57_RS04050 Genome accession   NZ_CP026009
Coordinates   871878..873422 (-) Length   514 a.a.
NCBI ID   WP_009874705.1    Uniprot ID   -
Organism   Actinobacillus pleuropneumoniae strain App6     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 866878..878422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CYK57_RS04025 (CYK57_00805) efeO 867761..868573 (+) 813 WP_005607533.1 iron uptake system protein EfeO -
  CYK57_RS04030 (CYK57_00806) efeB 868585..869778 (+) 1194 WP_009874702.1 iron uptake transporter deferrochelatase/peroxidase subunit -
  CYK57_RS04035 (CYK57_00807) - 869789..870409 (+) 621 WP_009874703.1 hypothetical protein -
  CYK57_RS04040 (CYK57_00808) - 870449..871267 (-) 819 WP_005604126.1 PHP domain-containing protein -
  CYK57_RS04045 (CYK57_00809) - 871271..871861 (-) 591 WP_009874704.1 DNA glycosylase -
  CYK57_RS04050 (CYK57_00810) sbcB 871878..873422 (-) 1545 WP_009874705.1 exodeoxyribonuclease I Machinery gene
  CYK57_RS04055 (CYK57_00811) - 873664..875070 (-) 1407 WP_009874706.1 chloride channel protein -
  CYK57_RS04060 (CYK57_00812) asnS 875278..876681 (+) 1404 WP_005617159.1 asparagine--tRNA ligase -
  CYK57_RS04065 (CYK57_00813) epmB 876785..877786 (-) 1002 WP_005600857.1 EF-P beta-lysylation protein EpmB -

Sequence

Protein


Download         Length: 514 a.a.        Molecular weight: 58468.62 Da        Isoelectric Point: 5.6335

>NTDB_id=221559 CYK57_RS04050 WP_009874705.1 871878..873422(-) (sbcB) [Actinobacillus pleuropneumoniae strain App6]
MNKNLTFFFYDYESFGVSPALDRPAQFACIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGITPQQCNAEGVPEPEF
AARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGVPNF
KLENLTKANGIAHENAHDAMADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA
WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEAVAPVPLKGVHINRCPIIAPAKVLLPENAARL
GIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADER
VEALLFHYRARHYPETLSRAEQIKWQKYCHQQIDAKSAQFAEAIDSLFQIHHDNPEKVKLLENLTAYAAQIAEFQVVKHT
ANAQSEQLVSALNQVAEQGMDKAAKLEMLKALIK

Nucleotide


Download         Length: 1545 bp        

>NTDB_id=221559 CYK57_RS04050 WP_009874705.1 871878..873422(-) (sbcB) [Actinobacillus pleuropneumoniae strain App6]
ATGAATAAAAATCTTACTTTTTTCTTTTATGATTACGAAAGTTTCGGTGTGAGTCCGGCGTTAGATCGTCCGGCACAGTT
TGCCTGTATTCGTACCGATAGTGATTTTAATATCATCGGTGAGCCGGTGATGTTTTATTGTAAGCAAACACCGGATTATT
TACCTTCGCCTGAAGCGGTGATGGTGACGGGTATTACTCCGCAACAGTGTAACGCTGAAGGCGTGCCGGAACCGGAATTT
GCTGCACGAATCCACGCTGAATTCAGCCAGCCGAACACTTGCATTTTAGGCTATAACAATATTCGTTATGACGATGAAAT
GACCCGTTATACCTTTTTCCGCAATTTCTTTGACCCGTATGAATATAGCTGGAAAAATGGTAATTCTCGTTGGGATCTGT
TAGATCTTGTTCGAGCTTGTTATGCACTGCGTCCGGACGGCATTGAATGGGTAATAGATGAAAACGGTGTGCCGAATTTC
AAATTAGAGAATCTCACTAAAGCGAACGGCATTGCTCATGAAAATGCGCACGATGCAATGGCGGACGTTTACGCCACGAT
TGCGATGGCGAAATTGATTAAGCAAAAACAGCCGAAACTTTTCCAATTTTTCTTTGAAAATCGTGGTAAGAAAGAAATTG
AGAAAATGATTGATACCGGTGAAATGACCCCGTTGGTACACGTTTCCGGCATGTTCGGTAATGCGCGTGCTAATACCGCT
TGGATTGCACCGATTGCGTGGCACCCAACTAATCAAAATCAAGTGTTATGTTGCGATCTATCCGGCGATGTTAGTGCCTT
ATTAACGGATTCAGCGGAAGAATTACGTACTCGTCTATACACTAAAAAAGAAGAGCTGGCTGAAGCTGTTGCACCCGTTC
CATTAAAAGGGGTACATATTAATCGTTGTCCGATTATTGCCCCAGCAAAAGTGTTGTTGCCTGAAAATGCGGCTCGCTTA
GGCATTGATCGTGAGCGTTGTTTGGAAAATCTCAAATTACTGAAGGCGAATAAAAGTTTAGTGCGTGAGAAAGTGACCGA
AATTTTTATGGAAGAACGGAGCTTTGAACCTTCTGCGAATGTGGAAACCACGCTGTATGACGGCTTTTTCTCACCGGCAG
ATAAAAATAATATGGCGATTTTGCGTACGTTACCGCCACAAGAATTGGCGCATCACGGCTTACAGTTTGCCGATGAACGA
GTAGAAGCTTTGTTATTTCATTATCGAGCCAGACATTATCCCGAAACATTGAGCCGAGCGGAACAGATTAAATGGCAGAA
ATATTGTCATCAGCAGATAGATGCCAAATCGGCACAATTTGCCGAAGCGATTGATAGCTTATTCCAAATTCATCACGATA
ATCCGGAAAAGGTAAAATTATTGGAAAATTTGACCGCTTACGCTGCACAAATTGCGGAATTTCAGGTAGTTAAACACACC
GCTAATGCGCAAAGCGAGCAGCTAGTTTCAGCCTTAAACCAAGTGGCGGAACAGGGTATGGATAAAGCGGCGAAGTTGGA
AATGCTAAAGGCATTAATTAAATAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(9-188)

Exonuclease C-terminal (ExoI_SH3)

(208-469)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

53.961

90.856

0.49