Detailed information NTG0221385

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: C1H56_RS01525
• Genome accession: NZ_CP025936
• Coordinates: 292924..293931 (+)
• Length: 335 a.a.
• NCBI ID: WP_000116737.1
• Uniprot ID: O51804
• Organism: Vibrio cholerae strain A1552
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 287924..298931

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
C1H56_RS01490 (C1H56_01490)	ftsB	287981..288265 (+)	285	WP_001263189.1	cell division protein FtsB	-
C1H56_RS01495 (C1H56_01495)	ispD	288262..288960 (+)	699	WP_001061951.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
C1H56_RS01500 (C1H56_01500)	ispF	288957..289433 (+)	477	WP_000619209.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
C1H56_RS01505 (C1H56_01505)	truD	289463..290548 (+)	1086	WP_000129752.1	tRNA pseudouridine(13) synthase TruD	-
C1H56_RS01510 (C1H56_01510)	surE	290550..291302 (+)	753	WP_000698379.1	5'/3'-nucleotidase SurE	-
C1H56_RS01515 (C1H56_01515)	-	291295..291921 (+)	627	WP_000002982.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
C1H56_RS01520 (C1H56_01520)	nlpD	291921..292850 (+)	930	WP_053036405.1	murein hydrolase activator NlpD	-
C1H56_RS01525 (C1H56_01525)	rpoS	292924..293931 (+)	1008	WP_000116737.1	RNA polymerase sigma factor RpoS	Regulator
C1H56_RS01530 (C1H56_01530)	mutS	294024..296612 (-)	2589	WP_001894770.1	DNA mismatch repair protein MutS	-
C1H56_RS01535 (C1H56_01535)	cysM	296880..297767 (-)	888	WP_001279365.1	cysteine synthase CysM	-

Sequence

Protein

• Length: 335 a.a.
• Molecular weight: 38534.39 Da
• Isoelectric Point: 4.3648

>NTDB_id=221385 C1H56_RS01525 WP_000116737.1 292924..293931(+) (rpoS) [Vibrio cholerae strain A1552]
MSVSNTVTKVEEFDFEDEALEVLETDAELTSDEELVAVEGASEDVREEFDASAKSLDATQMYLSEIGFSPLLTAEEEVLY
ARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALM
NQTRTIRLPIHVVKELNIYLRTARELSQRLDHEPTPEEIALELDRPVDDVTKMLRLNERISSVDTPIGGDGDKALLDILP
DSHNADPEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQIQVEGLRRLREILVK
QGLNMEALFNVEYDN

Nucleotide

• Length: 1008 bp

>NTDB_id=221385 C1H56_RS01525 WP_000116737.1 292924..293931(+) (rpoS) [Vibrio cholerae strain A1552]
ATGAGTGTCAGCAATACCGTAACCAAAGTAGAAGAGTTCGATTTTGAAGATGAAGCACTGGAAGTGCTAGAAACTGATGC
CGAGCTCACCAGTGATGAAGAATTAGTTGCTGTTGAAGGGGCAAGTGAAGACGTTCGTGAAGAGTTTGATGCTTCTGCGA
AAAGTCTTGATGCGACCCAGATGTATCTCAGCGAAATTGGTTTTTCACCGCTCCTTACTGCCGAAGAAGAAGTGCTTTAT
GCTCGTCGTGCCTTACGTGGTGATGAAGCCGCACGTAAACGCATGATTGAAAGTAACTTGCGTCTGGTGGTAAAAATTTC
ACGCCGTTACAGCAACCGAGGATTAGCACTGCTCGATCTGATTGAAGAAGGTAATCTTGGTCTGATCCGTGCGGTTGAGA
AATTCGATCCAGAACGCGGTTTCCGCTTCTCTACCTACGCAACATGGTGGATCCGTCAAACCATTGAACGTGCGCTGATG
AACCAAACACGCACCATTCGTCTACCGATTCATGTCGTCAAAGAGCTGAACATTTATTTGCGTACTGCTCGCGAATTATC
ACAGCGCCTTGACCACGAACCTACACCAGAAGAAATTGCTCTTGAGTTAGACCGACCTGTCGATGATGTCACTAAGATGC
TGCGTCTTAACGAACGGATCAGCTCAGTGGATACGCCAATTGGTGGGGATGGAGATAAGGCACTGCTGGATATTTTGCCA
GACTCTCACAATGCCGATCCTGAGTTTTCAACTCAAGATGATGACATTCGTGAATCGCTGCTCAACTGGTTGGATGAACT
TAATCCAAAGCAAAAAGAAGTGCTTGCGCGTCGCTTTGGGCTTCTTGGCTATGAACCATCGACCTTGGAAGAAGTGGGTC
GTGAGATCAATCTCACTCGTGAGCGTGTTCGCCAAATCCAAGTGGAAGGTCTACGTCGTCTGCGTGAGATTTTGGTGAAA
CAAGGTTTGAATATGGAAGCGCTGTTTAACGTCGAATACGACAACTAA

Domains

Predicted by InterProScan.

• Sigma-70, region 4 (Sigma70_r4) (263-316)

• Sigma-70 region 3 (Sigma70_r3) (175-249)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (57-90)

• Sigma-70 region 2 (Sigma70_r2) (95-164)

3D structure

• AlphaFold DB: O51804

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	100	100	1