Detailed information    

insolico Bioinformatically predicted

Overview


Name   eppA   Type   Machinery gene
Locus tag   B5K38_RS01420 Genome accession   NZ_CP020120
Coordinates   259396..260436 (+) Length   346 a.a.
NCBI ID   WP_119720583.1    Uniprot ID   A0A2Z5PUR6
Organism   Methanococcus maripaludis strain OS7mut1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 254396..265436
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5K38_RS01400 - 256291..257439 (+) 1149 WP_330939329.1 tRNA (guanine(10)-N(2))-dimethyltransferase -
  B5K38_RS01405 - 257473..258204 (-) 732 WP_119720582.1 amino acid ABC transporter ATP-binding protein -
  B5K38_RS01410 - 258245..258931 (-) 687 WP_013998677.1 HDIG domain-containing metalloprotein -
  B5K38_RS01415 - 259013..259381 (+) 369 WP_011170175.1 cysteine-rich small domain-containing protein -
  B5K38_RS01420 eppA 259396..260436 (+) 1041 WP_119720583.1 A24 family peptidase C-terminal domain-containing protein Machinery gene
  B5K38_RS01425 - 260438..260827 (+) 390 WP_119720584.1 class III signal peptide-containing protein -
  B5K38_RS01430 - 260954..262102 (+) 1149 WP_119720585.1 DUF515 domain-containing protein -
  B5K38_RS01435 - 262102..262995 (+) 894 WP_119720586.1 hypothetical protein -
  B5K38_RS01440 - 263029..263445 (+) 417 WP_013998683.1 class III signal peptide-containing protein -
  B5K38_RS01445 - 263423..263872 (+) 450 WP_119720587.1 hypothetical protein -
  B5K38_RS01450 - 263838..264356 (+) 519 WP_119720588.1 hypothetical protein -

Sequence


Protein


Download         Length: 346 a.a.        Molecular weight: 38853.44 Da        Isoelectric Point: 7.1262

>NTDB_id=221342 B5K38_RS01420 WP_119720583.1 259396..260436(+) (eppA) [Methanococcus maripaludis strain OS7mut1]
MFGFDNLILGVYLFNFLLILTATYTDIKERIIPHFVIILMLIVNLPIGYYFFGFDAITSFFATLILCLILGVGMGGGDVK
MFTALSPLFAAETIYFVPKDILILIGLSALFAAIFPMTKILKNYWKDIIPSSAYLAMLIGIIVSITEIYSIGNTKTILWI
YIILSIFISRKIPKYRIISNKLGYITPIYLVGFYLLNPAYFVSENVLISFFVYIGQLSLISLVIYALTGAEISSKKQISD
LKEGDIIRDIVTIKENGEVTVENANILKRFKHMIYGEMGKLEGKSLMTDGEGLSNENLELLNKLQNEGKIGGELNVLTTY
PFVPFVLVAYCVITLLNMGFINYLVR

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=221342 B5K38_RS01420 WP_119720583.1 259396..260436(+) (eppA) [Methanococcus maripaludis strain OS7mut1]
ATGTTTGGATTTGATAATTTAATTTTAGGAGTTTATTTATTCAATTTTTTACTGATACTGACTGCAACATATACTGATAT
CAAAGAGCGAATAATTCCCCATTTTGTAATTATATTGATGTTAATTGTTAATTTACCAATCGGGTATTATTTTTTTGGTT
TTGATGCAATAACTTCATTTTTTGCAACGTTGATTTTATGTTTAATTCTTGGGGTCGGCATGGGTGGTGGAGATGTTAAG
ATGTTTACGGCATTATCTCCACTTTTTGCAGCAGAAACTATATATTTCGTTCCGAAGGATATTTTAATATTAATCGGTTT
AAGTGCACTGTTTGCGGCAATTTTCCCAATGACAAAAATATTAAAAAATTACTGGAAAGATATTATTCCATCTTCCGCAT
ATCTTGCAATGCTTATTGGAATAATAGTTTCGATTACAGAAATCTATTCTATTGGAAATACCAAGACAATACTATGGATT
TACATAATTTTATCGATATTTATTTCCCGAAAAATTCCAAAATATCGAATTATATCTAATAAACTTGGATATATTACGCC
TATTTACTTGGTTGGATTTTATTTACTCAATCCTGCGTATTTTGTATCCGAAAATGTTCTTATTTCGTTTTTTGTGTATA
TTGGACAGCTTTCCTTAATTTCGCTCGTGATATATGCATTAACGGGTGCTGAAATATCTTCAAAAAAACAAATCAGCGAT
TTAAAAGAAGGGGACATAATTCGGGATATTGTTACAATAAAAGAAAATGGCGAAGTAACTGTTGAAAATGCAAATATTTT
GAAGCGTTTCAAGCACATGATTTATGGAGAAATGGGTAAACTCGAAGGAAAATCGTTAATGACTGATGGAGAAGGTCTTT
CTAATGAAAATCTGGAATTATTAAATAAACTGCAAAATGAAGGGAAAATCGGCGGGGAATTAAATGTTTTAACTACGTAT
CCGTTTGTTCCATTTGTGCTTGTTGCTTACTGTGTAATTACCCTACTAAATATGGGCTTTATAAATTATCTGGTGAGATA
A


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A2Z5PUR6

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eppA Methanococcus maripaludis strain DSM 2067

98.841

99.711

0.986


Multiple sequence alignment