Detailed information    

insolico Bioinformatically predicted

Overview

Name   epdK   Type   Machinery gene
Locus tag   B5K38_RS00380 Genome accession   NZ_CP020120
Coordinates   69679..70737 (-) Length   352 a.a.
NCBI ID   WP_119720491.1    Uniprot ID   A0A2Z5PUJ7
Organism   Methanococcus maripaludis strain OS7mut1     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 64679..75737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5K38_RS00355 mptA 65570..66517 (+) 948 WP_119720487.1 GTP cyclohydrolase MptA -
  B5K38_RS00360 - 66543..67592 (+) 1050 WP_119720488.1 ATP-grasp domain-containing protein -
  B5K38_RS00365 tfe 67596..68153 (+) 558 WP_011169980.1 transcription factor E -
  B5K38_RS00370 - 68164..68751 (+) 588 WP_119720489.1 HDIG domain-containing metalloprotein -
  B5K38_RS00375 epdJ 68778..69674 (-) 897 WP_119720490.1 type II secretion system F family protein Machinery gene
  B5K38_RS00380 epdK 69679..70737 (-) 1059 WP_119720491.1 type II secretion system F family protein Machinery gene
  B5K38_RS00385 epdL 70749..72398 (-) 1650 WP_119720492.1 ATPase, T2SS/T4P/T4SS family Machinery gene
  B5K38_RS00390 - 72408..73427 (-) 1020 WP_119720493.1 transcription initiation factor IIB -
  B5K38_RS00395 - 73446..73727 (-) 282 WP_011169986.1 Gar1/Naf1 family protein -
  B5K38_RS00400 fni 74231..75298 (+) 1068 WP_011169987.1 type 2 isopentenyl-diphosphate Delta-isomerase -

Sequence

Protein


Download         Length: 352 a.a.        Molecular weight: 39795.73 Da        Isoelectric Point: 9.8110

>NTDB_id=221340 B5K38_RS00380 WP_119720491.1 69679..70737(-) (epdK) [Methanococcus maripaludis strain OS7mut1]
MKRKTEKKQGTFDKLANTLKGVKTPKKRKISRVGRSEYLKKIFERKTEDIHKDEILEFYEPYIDETPEVSIDLDYLLFEK
KEFGALGGYSRSFSYWVTNTSFLPSKRDYQYAGIVDERVYFLKMMIAAITTVVLFIIYGVLTGDVFSGVSNGVLLAVIIV
VGSIFYPKLKLTLFRGEIKIQVLMSILHLISMLNSGASVQEALKNIANNPEYGITSFEFRSIIKDINQGGYNFVEALERA
KIRTKIFLMRQLYDQLILAANKGGTQLLLENLYNEIVRESISKIDSSKFQISNLGNLIFGIGLIIPFSGMIQSALGAQQG
FDGIINAIDLVMGKIGLMSTIIFTIFIKMKIE

Nucleotide


Download         Length: 1059 bp        

>NTDB_id=221340 B5K38_RS00380 WP_119720491.1 69679..70737(-) (epdK) [Methanococcus maripaludis strain OS7mut1]
ATGAAAAGAAAAACTGAAAAAAAACAGGGTACTTTTGATAAACTCGCCAATACATTAAAAGGAGTTAAAACTCCGAAAAA
AAGAAAAATATCTAGGGTTGGAAGATCGGAATATTTAAAAAAAATCTTCGAAAGAAAAACTGAAGATATACATAAAGATG
AGATTTTAGAGTTTTACGAACCATATATCGATGAAACTCCCGAAGTAAGTATTGACTTAGATTATTTACTTTTTGAAAAA
AAAGAATTTGGAGCACTTGGCGGATACTCCAGATCTTTTTCATACTGGGTTACAAACACCTCATTTTTACCATCTAAGAG
GGATTACCAGTATGCAGGTATTGTAGATGAGCGAGTTTATTTCTTAAAGATGATGATTGCAGCAATCACCACGGTTGTTT
TATTCATAATTTACGGTGTTTTGACCGGCGATGTATTTTCTGGCGTTTCTAATGGGGTACTTTTAGCAGTTATTATAGTT
GTTGGTAGTATATTTTATCCAAAACTGAAATTAACATTGTTTAGAGGGGAAATTAAAATTCAGGTGTTAATGAGTATATT
ACACCTTATTTCGATGTTAAATTCTGGCGCTTCTGTTCAGGAAGCTTTGAAAAATATTGCAAATAACCCTGAATATGGAA
TTACTTCTTTTGAATTTAGAAGTATCATAAAAGACATTAATCAGGGCGGTTATAATTTCGTAGAAGCACTCGAAAGGGCC
AAAATAAGAACAAAAATATTTCTGATGAGACAGCTTTATGACCAACTGATTCTTGCAGCGAATAAAGGTGGAACGCAGCT
TTTACTTGAAAATTTATATAATGAAATAGTTAGAGAATCTATCTCAAAAATAGATAGCTCAAAATTCCAAATATCAAATT
TGGGAAATCTTATATTTGGTATTGGTTTGATTATCCCATTTTCAGGAATGATACAGTCAGCATTGGGTGCTCAGCAAGGA
TTTGACGGAATTATCAATGCTATTGACCTCGTGATGGGCAAAATAGGGTTAATGTCAACAATTATATTTACCATCTTTAT
TAAAATGAAGATTGAGTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(187-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5PUJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  epdK Methanococcus maripaludis strain DSM 2067

98.295

100

0.983

Multiple sequence alignment