Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   BMF81_RS13410 Genome accession   NZ_CP020114
Coordinates   2997409..2999034 (-) Length   541 a.a.
NCBI ID   WP_006195149.1    Uniprot ID   A0A2S0Q7Q7
Organism   Nodularia spumigena UHCC 0039     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2992409..3004034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMF81_RS13390 (BMF81_02629) atpC 2993426..2993839 (-) 414 WP_006195146.1 ATP synthase F1 subunit epsilon -
  BMF81_RS13400 (BMF81_02630) atpD 2993945..2995393 (-) 1449 WP_006195147.1 F0F1 ATP synthase subunit beta -
  BMF81_RS13405 (BMF81_02631) - 2995653..2996567 (-) 915 WP_006195148.1 PEP-CTERM sorting domain-containing protein -
  BMF81_RS13410 (BMF81_02632) comA 2997409..2999034 (-) 1626 WP_006195149.1 DUF655 domain-containing protein Machinery gene
  BMF81_RS13415 - 2999149..3000300 (+) 1152 WP_107806459.1 cysteine desulfurase family protein -
  BMF81_RS24725 - 3000310..3000468 (+) 159 WP_006195151.1 hypothetical protein -
  BMF81_RS13420 - 3000496..3001752 (+) 1257 WP_006195152.1 ATP-binding protein -
  BMF81_RS13425 - 3001767..3002489 (+) 723 WP_006195153.1 hypothetical protein -

Sequence

Protein


Download         Length: 541 a.a.        Molecular weight: 61009.34 Da        Isoelectric Point: 8.2489

>NTDB_id=221308 BMF81_RS13410 WP_006195149.1 2997409..2999034(-) (comA) [Nodularia spumigena UHCC 0039]
MQIFPPRKYFLIFFLIFAIACQKAQPQNQLLAALPQDSLVQVYFNHSQASEYKEPYRQQTRLGDNLEQQIIDAISQAQST
VDVAIQELRLPKISQALAQRQKAGVKVRVILEDNYSRPLSSLTPAEVQKLTPREQARYQEFRNFVDLNQDNQLSPEEINQ
RDALIILNNAKIPWIDDRADGSAGSNLMHHKFVIVDNRWVIKTSANFTLSDIHGDYTNLSSLGNANNFLKIDSPELAVLF
TEEFNIMWGDGPGGKPDSRFGLQKPMRAPQNITLGDTKITVHFSPTSSTQPWNKSSNGLMGETLKSATKSIDMALFVFSE
QRLANIIKTRHQKNVSIRALIDSQFAYRYYSDAMDMMGVALSNNCKYELDNNPWQNPLTTVGVPTLARGDLLHHKFGVID
QQTVITGSHNWSKAANHGNDETVLIVENPTIAAHYVREFNRLYADAKLGVPLSVQQKISAEEKQCPQIISQTSSKFLEIK
PVNINTATLEELVTLPGIGEQLAQKIIIARQQQKFTSLADLTRVSGISTKSTEKWRDRIIW

Nucleotide


Download         Length: 1626 bp        

>NTDB_id=221308 BMF81_RS13410 WP_006195149.1 2997409..2999034(-) (comA) [Nodularia spumigena UHCC 0039]
GTGCAGATTTTTCCACCAAGAAAATATTTCCTGATTTTTTTTCTGATTTTCGCCATTGCTTGTCAAAAAGCCCAACCCCA
AAATCAGCTTTTAGCAGCTTTACCACAAGATTCCTTAGTTCAAGTTTATTTTAACCATTCTCAGGCTTCAGAATACAAAG
AACCTTACCGCCAGCAAACTCGCCTGGGGGATAACTTAGAACAACAGATTATTGATGCTATTTCTCAAGCTCAAAGCACA
GTGGATGTAGCCATTCAAGAATTACGTTTACCTAAAATTTCCCAAGCACTAGCCCAGAGACAAAAAGCGGGTGTGAAAGT
GAGGGTAATTTTAGAAGATAATTACAGTCGCCCTTTGAGTAGTTTAACACCTGCGGAAGTTCAAAAGTTAACGCCTAGAG
AACAAGCCCGTTATCAAGAATTTCGTAATTTTGTAGACTTGAACCAAGATAATCAACTCAGCCCCGAAGAAATTAATCAA
CGAGATGCTTTAATAATTTTAAATAATGCCAAAATTCCTTGGATAGATGACCGGGCTGATGGTTCAGCCGGTAGTAATTT
AATGCATCACAAATTTGTGATTGTGGATAATCGTTGGGTAATTAAAACTTCGGCTAATTTTACTTTGAGTGATATTCACG
GCGATTATACAAATCTTAGCAGTTTAGGCAATGCCAATAATTTTTTAAAGATTGATAGCCCAGAATTAGCTGTTTTATTT
ACTGAGGAGTTTAATATTATGTGGGGTGATGGCCCAGGAGGTAAGCCAGATAGTAGATTTGGGTTGCAAAAACCGATGCG
AGCGCCTCAAAATATCACATTAGGTGACACCAAAATAACAGTCCATTTTTCGCCTACTTCCTCCACCCAACCTTGGAATA
AATCTAGCAATGGTTTAATGGGAGAAACTTTAAAATCCGCAACTAAATCTATTGATATGGCGTTGTTTGTTTTTTCTGAA
CAGCGTTTAGCTAATATTATTAAAACCCGCCATCAAAAAAATGTTTCTATCCGGGCTTTGATTGATTCACAATTTGCTTA
TCGTTACTATAGTGACGCTATGGATATGATGGGAGTAGCGCTGAGTAATAATTGTAAATATGAACTAGATAATAATCCTT
GGCAAAATCCCCTAACTACTGTGGGTGTACCTACCTTAGCTAGAGGTGATTTATTGCATCATAAATTTGGCGTAATTGAT
CAACAAACAGTAATTACAGGTTCTCATAATTGGTCAAAAGCTGCCAATCATGGTAATGATGAAACAGTATTAATAGTGGA
AAATCCGACCATTGCCGCCCATTATGTGCGAGAATTTAACCGTCTTTATGCTGATGCTAAACTTGGTGTACCGCTATCAG
TTCAACAAAAAATTTCCGCAGAAGAAAAACAATGTCCTCAGATAATCAGTCAGACATCTAGCAAGTTTCTAGAAATTAAA
CCCGTAAATATCAATACTGCGACTCTAGAAGAATTGGTAACTCTTCCGGGAATAGGTGAGCAATTAGCCCAAAAAATTAT
AATTGCTCGTCAGCAGCAAAAGTTTACATCTCTAGCAGATTTAACCAGAGTATCAGGAATTAGCACTAAGAGTACAGAAA
AATGGCGCGATCGCATTATTTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(480-539)

PLD-like domain (PLDc_2)

(302-442)

PLD-like domain (PLDc_2)

(70-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S0Q7Q7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

47.993

100

0.486

Multiple sequence alignment