Detailed information
Bioinformatically predicted
Overview
| Name | pilM | Type | Machinery gene |
| Locus tag | BMF81_RS03285 | Genome accession | NZ_CP020114 |
| Coordinates | 785683..786789 (-) | Length | 368 a.a. |
| NCBI ID | WP_006195340.1 | Uniprot ID | A0A166K3J0 |
| Organism | Nodularia spumigena UHCC 0039 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 780683..791789
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BMF81_RS03265 (BMF81_00636) | - | 780791..781093 (-) | 303 | WP_006195344.1 | HU family DNA-binding protein | - |
| BMF81_RS03270 (BMF81_00637) | - | 781574..784057 (-) | 2484 | WP_107805892.1 | type IV pilus secretin family protein | - |
| BMF81_RS03275 (BMF81_00638) | - | 784135..784917 (-) | 783 | WP_006195342.1 | hypothetical protein | - |
| BMF81_RS03280 (BMF81_00639) | - | 784914..785678 (-) | 765 | WP_006195341.1 | PilN domain-containing protein | - |
| BMF81_RS03285 (BMF81_00640) | pilM | 785683..786789 (-) | 1107 | WP_006195340.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| BMF81_RS03290 | - | 786931..788229 (+) | 1299 | WP_107805893.1 | sugar ABC transporter substrate-binding protein | - |
| BMF81_RS03295 (BMF81_00642) | - | 788289..789569 (-) | 1281 | WP_017803995.1 | folylpolyglutamate synthase/dihydrofolate synthase family protein | - |
| BMF81_RS03300 | - | 789823..789948 (-) | 126 | WP_006195336.1 | photosystem II protein Y | - |
| BMF81_RS03305 (BMF81_00644) | - | 790187..790717 (-) | 531 | WP_006195334.1 | gamma carbonic anhydrase family protein | - |
| BMF81_RS03315 | - | 790956..791468 (+) | 513 | WP_042201884.1 | TIGR02652 family protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 40476.61 Da Isoelectric Point: 4.5048
>NTDB_id=221302 BMF81_RS03285 WP_006195340.1 785683..786789(-) (pilM) [Nodularia spumigena UHCC 0039]
MVKSFNNLLSKFNKGVGIELTPERVNLVQLRKQRQGLKLAALTSVPVPAGVIVDGQIIDISTMAELIQQALAQSKIKTSR
VATGVPGRDSIVRVIHVPAELDDKELRDMVLNHEAGLYLPYAREEADVDYQKLGYFVDDDGIEKVQVLLAATRKEITDTY
LSTFEQAGLQVDILEINSFALIRTIRDQLRQFGLEEAAVVVDIEFDSTEIVILINGVPQFSRSVPIGTYQMQMAISRAMS
LPTSRDMGLLQGMVIPANPLDGGQTGVTDINPSLAALLRVLGELTDELRRSIHFYISQSENLEVVEIFLAGPGGGLQQLD
EFFSQRLGLPTTQIDPIGFLSLQVDEEKYPKGERCGLGIILGLGMREV
MVKSFNNLLSKFNKGVGIELTPERVNLVQLRKQRQGLKLAALTSVPVPAGVIVDGQIIDISTMAELIQQALAQSKIKTSR
VATGVPGRDSIVRVIHVPAELDDKELRDMVLNHEAGLYLPYAREEADVDYQKLGYFVDDDGIEKVQVLLAATRKEITDTY
LSTFEQAGLQVDILEINSFALIRTIRDQLRQFGLEEAAVVVDIEFDSTEIVILINGVPQFSRSVPIGTYQMQMAISRAMS
LPTSRDMGLLQGMVIPANPLDGGQTGVTDINPSLAALLRVLGELTDELRRSIHFYISQSENLEVVEIFLAGPGGGLQQLD
EFFSQRLGLPTTQIDPIGFLSLQVDEEKYPKGERCGLGIILGLGMREV
Nucleotide
Download Length: 1107 bp
>NTDB_id=221302 BMF81_RS03285 WP_006195340.1 785683..786789(-) (pilM) [Nodularia spumigena UHCC 0039]
GTGGTTAAAAGCTTCAATAATCTGTTGAGCAAATTTAATAAAGGGGTAGGTATTGAACTTACACCAGAACGAGTGAATTT
AGTTCAGCTACGCAAGCAGCGCCAAGGCTTGAAATTAGCAGCGCTGACATCAGTACCGGTCCCCGCAGGTGTAATTGTCG
ATGGTCAAATTATCGACATTTCCACAATGGCGGAATTAATTCAGCAAGCACTGGCTCAGAGTAAAATCAAAACCTCTCGT
GTGGCTACTGGTGTACCAGGACGAGATTCTATAGTCCGTGTAATACATGTGCCGGCTGAGTTAGACGACAAAGAATTAAG
GGATATGGTATTAAACCACGAAGCCGGGTTGTATTTACCCTATGCTCGTGAAGAAGCTGATGTAGATTATCAAAAACTTG
GCTACTTTGTAGATGATGATGGCATTGAAAAAGTCCAGGTTTTGTTAGCAGCTACCCGCAAGGAAATAACTGATACCTAT
CTTAGTACTTTTGAACAGGCAGGATTGCAAGTCGATATTTTAGAGATTAACAGTTTTGCCCTGATTCGGACAATTCGTGA
TCAACTGCGGCAATTCGGGCTGGAAGAAGCGGCTGTAGTCGTTGATATCGAGTTCGATAGTACAGAAATAGTGATTTTGA
TTAATGGCGTACCGCAATTTTCGCGCAGTGTGCCTATTGGTACTTATCAAATGCAAATGGCTATCTCTAGGGCGATGAGT
TTACCTACATCACGGGATATGGGATTGTTACAAGGAATGGTTATTCCCGCAAATCCTCTAGATGGTGGGCAGACTGGAGT
TACTGACATCAATCCTAGTCTGGCAGCTTTATTGAGAGTTTTGGGTGAACTCACAGATGAACTGCGCCGTTCTATCCATT
TTTACATCAGTCAAAGTGAAAACTTGGAGGTGGTGGAGATTTTCTTAGCAGGGCCAGGGGGCGGACTACAACAGCTAGAT
GAGTTTTTCAGTCAAAGACTGGGCTTACCAACTACTCAAATTGATCCCATTGGGTTTTTGTCTTTGCAAGTTGATGAGGA
AAAGTACCCCAAAGGAGAACGTTGTGGGTTAGGGATAATACTTGGTCTGGGAATGCGGGAGGTGTGA
GTGGTTAAAAGCTTCAATAATCTGTTGAGCAAATTTAATAAAGGGGTAGGTATTGAACTTACACCAGAACGAGTGAATTT
AGTTCAGCTACGCAAGCAGCGCCAAGGCTTGAAATTAGCAGCGCTGACATCAGTACCGGTCCCCGCAGGTGTAATTGTCG
ATGGTCAAATTATCGACATTTCCACAATGGCGGAATTAATTCAGCAAGCACTGGCTCAGAGTAAAATCAAAACCTCTCGT
GTGGCTACTGGTGTACCAGGACGAGATTCTATAGTCCGTGTAATACATGTGCCGGCTGAGTTAGACGACAAAGAATTAAG
GGATATGGTATTAAACCACGAAGCCGGGTTGTATTTACCCTATGCTCGTGAAGAAGCTGATGTAGATTATCAAAAACTTG
GCTACTTTGTAGATGATGATGGCATTGAAAAAGTCCAGGTTTTGTTAGCAGCTACCCGCAAGGAAATAACTGATACCTAT
CTTAGTACTTTTGAACAGGCAGGATTGCAAGTCGATATTTTAGAGATTAACAGTTTTGCCCTGATTCGGACAATTCGTGA
TCAACTGCGGCAATTCGGGCTGGAAGAAGCGGCTGTAGTCGTTGATATCGAGTTCGATAGTACAGAAATAGTGATTTTGA
TTAATGGCGTACCGCAATTTTCGCGCAGTGTGCCTATTGGTACTTATCAAATGCAAATGGCTATCTCTAGGGCGATGAGT
TTACCTACATCACGGGATATGGGATTGTTACAAGGAATGGTTATTCCCGCAAATCCTCTAGATGGTGGGCAGACTGGAGT
TACTGACATCAATCCTAGTCTGGCAGCTTTATTGAGAGTTTTGGGTGAACTCACAGATGAACTGCGCCGTTCTATCCATT
TTTACATCAGTCAAAGTGAAAACTTGGAGGTGGTGGAGATTTTCTTAGCAGGGCCAGGGGGCGGACTACAACAGCTAGAT
GAGTTTTTCAGTCAAAGACTGGGCTTACCAACTACTCAAATTGATCCCATTGGGTTTTTGTCTTTGCAAGTTGATGAGGA
AAAGTACCCCAAAGGAGAACGTTGTGGGTTAGGGATAATACTTGGTCTGGGAATGCGGGAGGTGTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilM | Synechocystis sp. PCC 6803 |
61.308 |
99.728 |
0.611 |