Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   CF001_RS13250 Genome accession   NZ_CP025930
Coordinates   700110..700973 (+) Length   287 a.a.
NCBI ID   WP_012457665.1    Uniprot ID   B2RIG2
Organism   Porphyromonas gingivalis ATCC 33277     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 695110..705973
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CF001_RS13235 (CF001_0635) guaA 695713..697233 (-) 1521 WP_012457664.1 glutamine-hydrolyzing GMP synthase -
  CF001_RS22010 - 697550..697735 (-) 186 WP_143733469.1 DUF1661 domain-containing protein -
  CF001_RS13240 (CF001_0636) - 697950..698207 (+) 258 WP_004585129.1 type B 50S ribosomal protein L31 -
  CF001_RS13245 (CF001_0637) - 698424..699920 (+) 1497 WP_004585130.1 DegQ family serine endoprotease -
  CF001_RS13250 (CF001_0638) rpoS 700110..700973 (+) 864 WP_012457665.1 RNA polymerase sigma factor RpoD/SigA Regulator
  CF001_RS13255 (CF001_0639) rpsF 701070..701423 (+) 354 WP_004585132.1 30S ribosomal protein S6 -
  CF001_RS13260 (CF001_0640) rpsR 701427..701699 (+) 273 WP_004585133.1 30S ribosomal protein S18 -
  CF001_RS13265 (CF001_0641) rplI 701724..702263 (+) 540 WP_012457666.1 50S ribosomal protein L9 -
  CF001_RS13270 (CF001_0642) - 702539..704494 (+) 1956 WP_012457667.1 LptF/LptG family permease -
  CF001_RS13275 (CF001_0643) - 704497..705714 (+) 1218 WP_004585136.1 bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 32603.24 Da        Isoelectric Point: 5.6559

>NTDB_id=221285 CF001_RS13250 WP_012457665.1 700110..700973(+) (rpoS) [Porphyromonas gingivalis ATCC 33277]
MRQLKISKSITNRESASLDKYLQEIGREDLISVEEEVELAQAIKRGDRKALEKLTRANLRFVVSVAKQYQNQGLSLPDLI
NEGNLGLIKAAEKFDETRGFKFISYAVWWIRQSILQALAEQSRIVRLPLNQVGTLNKIIKAQQKFEQENERRPSSAELAK
ELDIAEDKIADTMKVSGRHISVDAPFVEGEDNSLLDVLVNEDTPNTDKSLINESLAVEIERALSTLTEREAEIVKLFFGI
AGCQEMTLEEIGDKFGLTRERVRQIKEKAIRRLRQSNECKNLKGYLG

Nucleotide


Download         Length: 864 bp        

>NTDB_id=221285 CF001_RS13250 WP_012457665.1 700110..700973(+) (rpoS) [Porphyromonas gingivalis ATCC 33277]
ATGAGGCAACTTAAAATTTCCAAGTCGATCACGAATCGTGAAAGCGCGTCTCTGGACAAGTATCTGCAGGAGATCGGTCG
CGAGGACCTGATCTCGGTCGAAGAAGAAGTAGAGTTGGCGCAAGCCATTAAACGCGGTGATCGCAAAGCTCTTGAAAAGC
TGACTCGTGCCAATCTTCGTTTCGTAGTATCCGTAGCCAAACAATACCAGAATCAGGGTCTCAGTTTGCCGGACTTGATC
AATGAAGGAAACCTCGGATTGATCAAAGCGGCAGAGAAATTCGACGAAACGCGCGGTTTTAAGTTTATCTCGTATGCCGT
ATGGTGGATCCGCCAGTCCATCCTGCAAGCATTGGCCGAGCAGTCTCGTATCGTCCGCCTGCCACTGAATCAGGTGGGAA
CACTCAACAAGATCATCAAGGCCCAGCAGAAATTCGAGCAGGAGAATGAGCGTCGCCCCTCATCAGCAGAGTTGGCTAAG
GAGCTGGACATTGCAGAAGACAAAATTGCCGATACGATGAAAGTATCCGGACGGCATATCTCTGTGGATGCTCCTTTCGT
GGAAGGTGAAGACAACAGCCTGCTGGATGTACTCGTCAATGAGGATACCCCCAATACGGACAAGTCGCTGATCAATGAAT
CGCTGGCCGTTGAGATAGAAAGAGCTTTGTCCACACTGACGGAGCGCGAAGCAGAGATCGTGAAGCTGTTCTTCGGCATT
GCCGGCTGTCAAGAGATGACACTGGAAGAAATCGGCGACAAATTCGGTCTCACCCGCGAACGCGTCCGTCAGATAAAAGA
GAAGGCTATTCGCCGTTTGCGACAGAGCAACGAGTGCAAGAATCTGAAAGGTTATCTCGGCTAA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(134-202)

Sigma-70, region 4 (Sigma70_r4)

(222-275)

Sigma-70 region 2 (Sigma70_r2)

(56-123)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(17-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RIG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

41.176

88.85

0.366