Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   EC767_RS16665 Genome accession   NZ_CP020107
Coordinates   3225828..3226457 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 13E0767     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3220828..3231457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EC767_RS16650 (EC767_16655) helD 3221070..3223124 (-) 2055 WP_000420536.1 DNA helicase IV -
  EC767_RS16655 (EC767_16660) yccF 3223247..3223693 (+) 447 WP_001261235.1 YccF domain-containing protein -
  EC767_RS16660 (EC767_16665) yccS 3223703..3225865 (+) 2163 WP_000875015.1 YccS family putative transporter -
  EC767_RS16665 (EC767_16670) sxy/tfoX 3225828..3226457 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  EC767_RS16670 (EC767_16675) sulA 3226676..3227185 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  EC767_RS16680 (EC767_16685) ompA 3227542..3228594 (+) 1053 WP_000750419.1 porin OmpA -
  EC767_RS16685 (EC767_16690) matP 3228669..3229121 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  EC767_RS16690 (EC767_16695) ycbZ 3229307..3231067 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=221270 EC767_RS16665 WP_000839153.1 3225828..3226457(-) (sxy/tfoX) [Escherichia coli strain 13E0767]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=221270 EC767_RS16665 WP_000839153.1 3225828..3226457(-) (sxy/tfoX) [Escherichia coli strain 13E0767]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment