Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXW53_RS21170 Genome accession   NZ_CP025920
Coordinates   4295132..4296559 (-) Length   475 a.a.
NCBI ID   WP_000980601.1    Uniprot ID   -
Organism   Escherichia coli strain 103605     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4290132..4301559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW53_RS21140 yeeZ 4290187..4291011 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  CXW53_RS21145 yeeY 4291057..4291986 (+) 930 WP_000803360.1 LysR substrate-binding domain-containing protein -
  CXW53_RS21150 yoeI 4292201..4292263 (+) 63 WP_010723108.1 membrane protein YoeI -
  CXW53_RS21155 plaP 4292253..4293611 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXW53_RS21160 tsuA 4293790..4294848 (+) 1059 WP_000492305.1 thiosulfate utilization transporter TsuA/YeeE -
  CXW53_RS21165 tsuB 4294862..4295089 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXW53_RS21170 sbcB 4295132..4296559 (-) 1428 WP_000980601.1 exodeoxyribonuclease I Machinery gene
  CXW53_RS21175 dacD 4296768..4297934 (+) 1167 WP_000830172.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXW53_RS21180 - 4298132..4298649 (+) 518 Protein_4096 ClbS/DfsB family four-helix bundle protein -
  CXW53_RS21185 - 4298668..4299888 (+) 1221 WP_000343765.1 ISL3-like element ISEc53 family transposase -
  CXW53_RS21190 sbmC 4299945..4300418 (+) 474 WP_001105378.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54428.71 Da        Isoelectric Point: 5.4700

>NTDB_id=221267 CXW53_RS21170 WP_000980601.1 4295132..4296559(-) (sbcB) [Escherichia coli strain 103605]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=221267 CXW53_RS21170 WP_000980601.1 4295132..4296559(-) (sbcB) [Escherichia coli strain 103605]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTGAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCAGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGTCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583