Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXW53_RS17575 Genome accession   NZ_CP025920
Coordinates   3550067..3550582 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 103605     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3545067..3555582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW53_RS17530 csrA 3545654..3545839 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXW53_RS17560 yqaB 3547297..3547863 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXW53_RS17565 yqaA 3547860..3548288 (+) 429 WP_001287457.1 YqaA family protein -
  CXW53_RS17570 gshA 3548361..3549917 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CXW53_RS17575 luxS 3550067..3550582 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXW53_RS17580 emrB 3550646..3552184 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXW53_RS17585 emrA 3552201..3553373 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXW53_RS17590 emrR 3553500..3554030 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXW53_RS17595 ygaH 3554121..3554456 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXW53_RS17600 ygaZ 3554446..3555183 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=221258 CXW53_RS17575 WP_001130210.1 3550067..3550582(+) (luxS) [Escherichia coli strain 103605]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=221258 CXW53_RS17575 WP_001130210.1 3550067..3550582(+) (luxS) [Escherichia coli strain 103605]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment