Detailed information NTG0221204

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: B4U62_RS20175
• Genome accession: NZ_CP020102
• Coordinates: 3846041..3847186 (+)
• Length: 381 a.a.
• NCBI ID: WP_003227549.1
• Uniprot ID: -
• Organism: Bacillus subtilis strain NCIB 3610
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 3841041..3852186

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
B4U62_RS20150 (B4U62_20150)	albF	3841057..3842337 (+)	1281	WP_003242974.1	pitrilysin family protein	-
B4U62_RS20155 (B4U62_20155)	albG	3842334..3843035 (+)	702	WP_003243391.1	antilisterial bacteriocin subtilosin biosynthesis protein AlbG	-
B4U62_RS20160 (B4U62_20160)	ywhL	3843041..3844417 (-)	1377	WP_003244415.1	YncE family protein	-
B4U62_RS20165 (B4U62_20165)	ywhK	3844456..3845811 (-)	1356	WP_003227552.1	YncE family protein	-
B4U62_RS23275 (B4U62_20170)	-	3845808..3846038 (-)	231	WP_009968328.1	hypothetical protein	-
B4U62_RS20175 (B4U62_20175)	rapF	3846041..3847186 (+)	1146	WP_003227549.1	response regulator aspartate phosphatase RapF	Regulator
B4U62_RS20180 (B4U62_20180)	phrF	3847170..3847289 (+)	120	WP_009968329.1	phosphatase RapF inhibitor PhrF	Regulator
B4U62_RS20185 (B4U62_20185)	ywhH	3847388..3847861 (+)	474	WP_003227547.1	YbaK/EbsC family protein	-
B4U62_RS20190 (B4U62_20190)	speB	3847893..3848765 (-)	873	WP_003227545.1	agmatinase	-
B4U62_RS20195 (B4U62_20195)	speE	3848826..3849656 (-)	831	WP_003227543.1	spermidine synthase	-
B4U62_RS20200 (B4U62_20200)	pbpG	3849858..3851933 (+)	2076	WP_003227540.1	transglycosylase domain-containing protein	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 45609.09 Da
• Isoelectric Point: 5.1503

>NTDB_id=221204 B4U62_RS20175 WP_003227549.1 3846041..3847186(+) (rapF) [Bacillus subtilis strain NCIB 3610]
MTGVISSSSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPR
LSDLLLEIDKKQARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFS
MDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYED
AIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAI
QGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQGGVSLYEIEV

Nucleotide

• Length: 1146 bp

>NTDB_id=221204 B4U62_RS20175 WP_003227549.1 3846041..3847186(+) (rapF) [Bacillus subtilis strain NCIB 3610]
GTGACAGGTGTCATATCTTCTTCTTCCATCGGAGAAAAGATTAACGAATGGTATATGTACATACGCCGATTCAGCATACC
CGATGCAGAATATTTGCGACGAGAAATCAAGCAAGAGCTGGATCAAATGGAAGAAGATCAAGACCTTCATTTGTACTATT
CACTGATGGAGTTTCGGCACAACCTAATGCTTGAGTACCTTGAACCGTTAGAAAAAATGAGGATTGAGGAACAGCCGAGA
CTGTCTGATCTGCTGCTTGAGATTGATAAAAAACAGGCTCGTTTAACTGGTCTGCTTGAGTACTATTTTAACTTCTTCAG
AGGCATGTACGAGCTGGACCAGCGGGAATATCTGTCGGCTATTAAATTTTTCAAAAAGGCCGAAAGCAAGCTGATATTCG
TTAAGGATCGGATAGAGAAAGCTGAGTTTTTCTTTAAGATGTCTGAATCTTATTACTATATGAAACAAACGTATTTTTCA
ATGGACTATGCACGGCAAGCATATGAAATATACAAAGAACATGAAGCTTATAATATAAGATTGCTGCAGTGTCATTCTTT
ATTTGCCACCAATTTTTTAGATTTAAAACAGTATGAGGATGCCATCTCACATTTTCAAAAAGCTTATTCTATGGCAGAAG
CTGAAAAGCAGCCCCAATTAATGGGGAGAACTTTGTACAATATCGGGCTTTGTAAAAACAGCCAAAGCCAATATGAGGAT
GCCATACCTTATTTCAAAAGAGCAATAGCTGTTTTTGAAGAATCAAATATTCTTCCTTCCTTACCTCAAGCGTATTTTTT
AATTACACAGATCCATTATAAATTAGGAAAAATAGATAAAGCTCATGAATATCATAGTAAGGGAATGGCTTATTCACAAA
AGGCCGGAGATGTAATATATTTATCAGAGTTTGAATTTTTGAAATCTTTATACTTATCAGGCCCGGATGAAGAAGCAATT
CAAGGATTTTTTGATTTTCTCGAAAGTAAAATGTTGTATGCTGATCTTGAAGATTTCGCTATTGATGTGGCAAAATATTA
TCATGAACGTAAAAATTTTCAAAAAGCTTCTGCTTATTTTTTGAAGGTGGAACAAGTAAGGCAACTTATTCAAGGAGGAG
TGAGTTTGTATGAAATTGAAGTCTAA

Domains

Predicted by InterproScan.

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

• Tetratricopeptide repeat (TPR_12) (223-290)

• Anaphase-promoting complex, cyclosome, subunit 3 (ANAPC3) (132-208)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	100	100	1
rapC	Bacillus subtilis subsp. subtilis str. 168	57.368	99.738	0.572