Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | B4U62_RS13895 | Genome accession | NZ_CP020102 |
| Coordinates | 2652408..2652818 (-) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain NCIB 3610 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2647774..2699264 | 2652408..2652818 | within | 0 |
Gene organization within MGE regions
Location: 2647774..2699264
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| B4U62_RS13870 (B4U62_13870) | yqeF | 2647941..2648672 (-) | 732 | WP_003229964.1 | SGNH/GDSL hydrolase family protein | - |
| B4U62_RS13875 (B4U62_13875) | cwlH | 2648924..2649676 (-) | 753 | WP_003229963.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| B4U62_RS13880 (B4U62_13880) | yqeD | 2649863..2650489 (+) | 627 | WP_003229962.1 | TVP38/TMEM64 family protein | - |
| B4U62_RS13885 (B4U62_13885) | gnd | 2650508..2651401 (-) | 894 | WP_003229961.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| B4U62_RS13890 (B4U62_13890) | yqeB | 2651653..2652375 (+) | 723 | WP_010886572.1 | hypothetical protein | - |
| B4U62_RS13895 (B4U62_13895) | nucA/comI | 2652408..2652818 (-) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| B4U62_RS13900 (B4U62_13900) | - | 2653014..2653361 (+) | 348 | Protein_2700 | sigma-70 family RNA polymerase sigma factor | - |
| B4U62_RS13905 (B4U62_13905) | spoIVCA | 2653392..2654852 (-) | 1461 | WP_223257626.1 | site-specific DNA recombinase SpoIVCA | - |
| B4U62_RS23130 (B4U62_13910) | - | 2654810..2654988 (-) | 179 | Protein_2702 | hypothetical protein | - |
| B4U62_RS13915 (B4U62_13915) | arsC | 2655343..2655762 (-) | 420 | WP_004398596.1 | thioredoxin-dependent arsenate reductase | - |
| B4U62_RS13920 (B4U62_13920) | acr3 | 2655774..2656814 (-) | 1041 | WP_004398718.1 | arsenite efflux transporter Acr3 | - |
| B4U62_RS13925 (B4U62_13925) | arsK | 2656837..2657277 (-) | 441 | WP_003229954.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| B4U62_RS13930 (B4U62_13930) | arsR | 2657338..2657655 (-) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| B4U62_RS13935 (B4U62_13935) | yqcI | 2658027..2658791 (-) | 765 | WP_004398670.1 | YqcI/YcgG family protein | - |
| B4U62_RS13940 (B4U62_13940) | rapE | 2659234..2660361 (+) | 1128 | WP_004398842.1 | response regulator aspartate phosphatase RapE | - |
| B4U62_RS13945 (B4U62_13945) | phrE | 2660351..2660485 (+) | 135 | WP_004398770.1 | phosphatase RapE inhibitor PhrE | - |
| B4U62_RS13950 (B4U62_13950) | - | 2660595..2660753 (+) | 159 | WP_003245945.1 | hypothetical protein | - |
| B4U62_RS13955 (B4U62_13955) | yqcG | 2661123..2662718 (+) | 1596 | WP_004399034.1 | LXG family T7SS effector endonuclease toxin YqcG | - |
| B4U62_RS13960 (B4U62_13960) | yqcF | 2662733..2663311 (+) | 579 | WP_009967790.1 | type VII secretion system immunity protein YqcF | - |
| B4U62_RS22855 | - | 2663429..2663575 (+) | 147 | WP_009967791.1 | hypothetical protein | - |
| B4U62_RS13965 (B4U62_13965) | - | 2663572..2663934 (-) | 363 | WP_003229947.1 | hypothetical protein | - |
| B4U62_RS13970 (B4U62_13970) | - | 2663950..2664429 (-) | 480 | WP_004399085.1 | hypothetical protein | - |
| B4U62_RS13975 (B4U62_13975) | cwlA | 2664594..2665412 (-) | 819 | WP_003229946.1 | N-acetylmuramoyl-L-alanine amidase CwlA | - |
| B4U62_RS13980 (B4U62_13980) | skhD | 2665457..2665879 (-) | 423 | WP_003246208.1 | holin family protein | - |
| B4U62_RS13985 (B4U62_13985) | xepAK | 2665924..2666817 (-) | 894 | WP_003246010.1 | hypothetical protein | - |
| B4U62_RS13990 (B4U62_13990) | yqcE | 2666905..2667069 (-) | 165 | WP_003229944.1 | XkdX family protein | - |
| B4U62_RS13995 (B4U62_13995) | yqcD | 2667066..2667401 (-) | 336 | WP_009967793.1 | XkdW family protein | - |
| B4U62_RS14000 (B4U62_14000) | yqcC | 2667411..2668511 (-) | 1101 | WP_003229943.1 | pyocin knob domain-containing protein | - |
| B4U62_RS14005 (B4U62_14005) | - | 2668514..2668786 (-) | 273 | WP_003229942.1 | hypothetical protein | - |
| B4U62_RS14010 (B4U62_14010) | yqcA | 2668783..2669361 (-) | 579 | WP_003229941.1 | YmfQ family protein | - |
| B4U62_RS14015 (B4U62_14015) | yqbT | 2669345..2670391 (-) | 1047 | WP_003229940.1 | baseplate J/gp47 family protein | - |
| B4U62_RS14020 (B4U62_14020) | yqbS | 2670384..2670809 (-) | 426 | WP_004398572.1 | DUF2634 domain-containing protein | - |
| B4U62_RS14025 (B4U62_14025) | yqbR | 2670822..2671085 (-) | 264 | WP_003229938.1 | DUF2577 family protein | - |
| B4U62_RS14030 (B4U62_14030) | yqbQ | 2671082..2672062 (-) | 981 | WP_004398524.1 | hypothetical protein | - |
| B4U62_RS14035 (B4U62_14035) | yqbP | 2672075..2672734 (-) | 660 | WP_004398548.1 | LysM peptidoglycan-binding domain-containing protein | - |
| B4U62_RS14040 (B4U62_14040) | yqbO | 2672727..2677484 (-) | 4758 | WP_003246092.1 | phage tail tape measure protein | - |
| B4U62_RS14045 (B4U62_14045) | - | 2677487..2677624 (-) | 138 | WP_003229934.1 | hypothetical protein | - |
| B4U62_RS14050 (B4U62_14050) | - | 2677666..2678115 (-) | 450 | WP_003229933.1 | phage portal protein | - |
| B4U62_RS14055 (B4U62_14055) | txpA | 2678261..2678440 (+) | 180 | WP_004398662.1 | type I toxin-antitoxin system toxin TxpA | - |
| B4U62_RS22640 | bsrH | 2678820..2678909 (+) | 90 | WP_075058862.1 | type I toxin-antitoxin system toxin BsrH | - |
| B4U62_RS14065 (B4U62_14065) | yqbM | 2679163..2679606 (-) | 444 | WP_003229930.1 | phage tail tube protein | - |
| B4U62_RS14070 (B4U62_14070) | yqbK | 2679609..2681009 (-) | 1401 | WP_003229929.1 | phage tail sheath family protein | - |
| B4U62_RS14075 (B4U62_14075) | - | 2681010..2681201 (-) | 192 | WP_010886574.1 | hypothetical protein | - |
| B4U62_RS14080 (B4U62_14080) | yqbJ | 2681198..2681635 (-) | 438 | WP_003229927.1 | DUF6838 family protein | - |
| B4U62_RS14085 (B4U62_14085) | yqbI | 2681648..2682151 (-) | 504 | WP_003246050.1 | HK97 gp10 family phage protein | - |
| B4U62_RS14090 (B4U62_14090) | yqbH | 2682148..2682510 (-) | 363 | WP_003229925.1 | YqbH/XkdH family protein | - |
| B4U62_RS14095 (B4U62_14095) | gkpG | 2682507..2682902 (-) | 396 | WP_004398566.1 | DUF3199 family protein | - |
| B4U62_RS14100 (B4U62_14100) | yqbF | 2682906..2683217 (-) | 312 | WP_003229923.1 | YqbF domain-containing protein | - |
| B4U62_RS14105 (B4U62_14105) | skdG | 2683228..2684163 (-) | 936 | WP_003229922.1 | phage major capsid protein | - |
| B4U62_RS14110 (B4U62_14110) | yqbD | 2684182..2685150 (-) | 969 | WP_003229921.1 | XkdF-like putative serine protease domain-containing protein | - |
| B4U62_RS14115 (B4U62_14115) | - | 2685183..2685836 (-) | 654 | WP_003229920.1 | hypothetical protein | - |
| B4U62_RS14120 (B4U62_14120) | yqbB | 2685877..2686794 (-) | 918 | WP_004398748.1 | phage head morphogenesis protein | - |
| B4U62_RS14125 (B4U62_14125) | yqbA | 2686791..2688323 (-) | 1533 | WP_004398894.1 | phage portal protein | - |
| B4U62_RS14130 (B4U62_14130) | stmB | 2688327..2689622 (-) | 1296 | WP_003229917.1 | PBSX family phage terminase large subunit | - |
| B4U62_RS14135 (B4U62_14135) | terS | 2689615..2690334 (-) | 720 | WP_003229916.1 | phage terminase small subunit | - |
| B4U62_RS14140 (B4U62_14140) | - | 2690402..2690866 (-) | 465 | WP_004398685.1 | hypothetical protein | - |
| B4U62_RS14145 (B4U62_14145) | yqaQ | 2691010..2691465 (-) | 456 | WP_004398775.1 | hypothetical protein | - |
| B4U62_RS14150 (B4U62_14150) | - | 2691663..2692592 (+) | 930 | WP_003229913.1 | hypothetical protein | - |
| B4U62_RS14155 (B4U62_14155) | yqaO | 2692666..2692872 (-) | 207 | WP_003229912.1 | XtrA/YqaO family protein | - |
| B4U62_RS14160 (B4U62_14160) | yqaN | 2692954..2693382 (-) | 429 | WP_009967809.1 | RusA family crossover junction endodeoxyribonuclease | - |
| B4U62_RS14165 (B4U62_14165) | - | 2693478..2693627 (-) | 150 | WP_003229910.1 | hypothetical protein | - |
| B4U62_RS14170 (B4U62_14170) | sknM | 2693618..2694559 (-) | 942 | WP_075058863.1 | ATP-binding protein | - |
| B4U62_RS14175 (B4U62_14175) | yqaL | 2694441..2695118 (-) | 678 | WP_010886575.1 | DnaD domain protein | - |
| B4U62_RS14180 (B4U62_14180) | recT | 2695194..2696048 (-) | 855 | WP_003229907.1 | recombinase RecT | - |
| B4U62_RS14185 (B4U62_14185) | yqaJ | 2696051..2697010 (-) | 960 | WP_004398673.1 | YqaJ viral recombinase family protein | - |
| B4U62_RS14190 (B4U62_14190) | - | 2697116..2697310 (-) | 195 | WP_003229905.1 | hypothetical protein | - |
| B4U62_RS22860 | - | 2697270..2697443 (-) | 174 | WP_119123069.1 | hypothetical protein | - |
| B4U62_RS14195 (B4U62_14195) | sknH | 2697440..2697697 (-) | 258 | WP_003245994.1 | YqaH family protein | - |
| B4U62_RS14200 (B4U62_14200) | yqaG | 2697694..2698263 (-) | 570 | WP_004398626.1 | helix-turn-helix transcriptional regulator | - |
| B4U62_RS14205 (B4U62_14205) | - | 2698337..2698477 (-) | 141 | WP_003229902.1 | hypothetical protein | - |
| B4U62_RS14210 (B4U62_14210) | yqaF | 2698507..2698737 (-) | 231 | WP_004398958.1 | helix-turn-helix transcriptional regulator | - |
| B4U62_RS14215 (B4U62_14215) | sknR | 2698914..2699264 (+) | 351 | WP_004398704.1 | transcriptional regulator SknR | - |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=221181 B4U62_RS13895 WP_009967785.1 2652408..2652818(-) (nucA/comI) [Bacillus subtilis strain NCIB 3610]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=221181 B4U62_RS13895 WP_009967785.1 2652408..2652818(-) (nucA/comI) [Bacillus subtilis strain NCIB 3610]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGTACCAGAGTGCTGTTTA
TTGTGCAGTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |