Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CXW56_RS17345 Genome accession   NZ_CP025916
Coordinates   3511738..3512253 (+) Length   171 a.a.
NCBI ID   WP_001130210.1    Uniprot ID   B6I678
Organism   Escherichia coli strain 120899     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3506738..3517253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW56_RS17300 csrA 3507325..3507510 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CXW56_RS17330 yqaB 3508968..3509534 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CXW56_RS17335 yqaA 3509531..3509959 (+) 429 WP_001287457.1 YqaA family protein -
  CXW56_RS17340 gshA 3510032..3511588 (+) 1557 WP_000611802.1 glutamate--cysteine ligase -
  CXW56_RS17345 luxS 3511738..3512253 (+) 516 WP_001130210.1 S-ribosylhomocysteine lyase Regulator
  CXW56_RS17350 emrB 3512317..3513855 (-) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  CXW56_RS17355 emrA 3513872..3515044 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CXW56_RS17360 emrR 3515171..3515701 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CXW56_RS17365 ygaH 3515792..3516127 (-) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  CXW56_RS17370 ygaZ 3516117..3516854 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19417.13 Da        Isoelectric Point: 4.7556

>NTDB_id=221177 CXW56_RS17345 WP_001130210.1 3511738..3512253(+) (luxS) [Escherichia coli strain 120899]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPEEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=221177 CXW56_RS17345 WP_001130210.1 3511738..3512253(+) (luxS) [Escherichia coli strain 120899]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCG
CTGCCGGAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B6I678

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737

Multiple sequence alignment