Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   B4U62_RS12125 Genome accession   NZ_CP020102
Coordinates   2340834..2341454 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain NCIB 3610     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335834..2346454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B4U62_RS12085 (B4U62_12085) ptsA 2336965..2337471 (-) 507 WP_009967573.1 glucose PTS transporter subunit IIA -
  B4U62_RS12090 (B4U62_12090) ypqA 2337609..2338028 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  B4U62_RS12095 (B4U62_12095) sppG 2338049..2338426 (-) 378 WP_004398696.1 YppG family protein -
  B4U62_RS12100 (B4U62_12100) yppF 2338614..2338802 (+) 189 WP_003230690.1 YppF family protein -
  B4U62_RS12105 (B4U62_12105) yppE 2338841..2339212 (-) 372 WP_003246080.1 YppE family protein -
  B4U62_RS12110 (B4U62_12110) yppD 2339258..2339503 (-) 246 WP_004398488.1 YppD family protein -
  B4U62_RS12115 (B4U62_12115) sspM 2339702..2339806 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  B4U62_RS12120 (B4U62_12120) yppC 2339831..2340793 (-) 963 WP_004398707.1 DUF2515 domain-containing protein -
  B4U62_RS12125 (B4U62_12125) recU 2340834..2341454 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  B4U62_RS12130 (B4U62_12130) ponA 2341476..2344220 (+) 2745 WP_004398589.1 PBP1A family penicillin-binding protein -
  B4U62_RS12135 (B4U62_12135) ypoC 2344296..2344790 (-) 495 WP_009967579.1 YpoC family protein -
  B4U62_RS12140 (B4U62_12140) nth 2344787..2345446 (-) 660 WP_009967580.1 endonuclease III -
  B4U62_RS12145 (B4U62_12145) dnaD 2345465..2346163 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=221165 B4U62_RS12125 WP_004399067.1 2340834..2341454(+) (recU) [Bacillus subtilis strain NCIB 3610]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=221165 B4U62_RS12125 WP_004399067.1 2340834..2341454(+) (recU) [Bacillus subtilis strain NCIB 3610]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment