Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   CXW72_RS20660 Genome accession   NZ_CP025913
Coordinates   4153519..4154946 (+) Length   475 a.a.
NCBI ID   WP_000980570.1    Uniprot ID   -
Organism   Escherichia coli strain 203740     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4148519..4159946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXW72_RS20620 yeeW 4148703..4148897 (+) 195 WP_000988599.1 DUF5983 family protein -
  CXW72_RS20625 - 4148931..4149023 (+) 93 Protein_4012 DUF957 domain-containing protein -
  CXW72_RS26280 - 4149312..4149449 (-) 138 Protein_4013 transposase domain-containing protein -
  CXW72_RS26145 - 4149512..4149694 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CXW72_RS20640 tmaR 4149795..4150124 (-) 330 WP_000450409.1 DUF496 family protein -
  CXW72_RS20645 yeeA 4150296..4151354 (-) 1059 WP_001200905.1 FUSC family protein -
  CXW72_RS20650 sbmC 4151552..4152025 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CXW72_RS20655 dacD 4152144..4153310 (-) 1167 WP_001735394.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  CXW72_RS20660 sbcB 4153519..4154946 (+) 1428 WP_000980570.1 exodeoxyribonuclease I Machinery gene
  CXW72_RS20665 tsuB 4154989..4155216 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  CXW72_RS20670 tsuA 4155230..4156288 (-) 1059 WP_000492340.1 thiosulfate utilization transporter TsuA/YeeE -
  CXW72_RS20675 plaP 4156467..4157825 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  CXW72_RS20680 yoeI 4157815..4157877 (-) 63 WP_010723108.1 membrane protein YoeI -
  CXW72_RS20685 yeeY 4158092..4159021 (-) 930 WP_000803337.1 LysR substrate-binding domain-containing protein -
  CXW72_RS20690 yeeZ 4159067..4159891 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54529.81 Da        Isoelectric Point: 5.4720

>NTDB_id=221106 CXW72_RS20660 WP_000980570.1 4153519..4154946(+) (sbcB) [Escherichia coli strain 203740]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EATFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=221106 CXW72_RS20660 WP_000980570.1 4153519..4154946(+) (sbcB) [Escherichia coli strain 203740]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCACGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTATTCACACCCGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAG

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581