Detailed information NTG0221034

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CXW72_RS00305
• Genome accession: NZ_CP025913
• Coordinates: 54244..55236 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain 203740
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 49244..60236

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CXW72_RS00280	-	50447..50578 (+)	132	Protein_49	serine/threonine protein phosphatase	-
CXW72_RS00285	-	50634..51331 (+)	698	WP_223419586.1	IS1 family transposase	-
CXW72_RS00290	-	51380..51916 (+)	537	WP_050438173.1	aldolase	-
CXW72_RS00295	ygbM	51921..52697 (+)	777	WP_001136934.1	HPr family phosphocarrier protein	-
CXW72_RS00300	ygbN	52786..54150 (+)	1365	WP_001735624.1	GntP family transporter	-
CXW72_RS00305	rpoS	54244..55236 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CXW72_RS00310	nlpD	55299..56393 (-)	1095	WP_224692580.1	murein hydrolase activator NlpD	-
CXW72_RS00315	pcm	56578..57204 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CXW72_RS00320	surE	57198..57959 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CXW72_RS00325	truD	57940..58989 (-)	1050	WP_126123232.1	tRNA pseudouridine(13) synthase TruD	-
CXW72_RS00330	ispF	58986..59465 (-)	480	WP_001735626.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CXW72_RS00335	ispD	59465..60175 (-)	711	WP_000246135.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=221034 CXW72_RS00305 WP_000081550.1 54244..55236(-) (rpoS) [Escherichia coli strain 203740]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=221034 CXW72_RS00305 WP_000081550.1 54244..55236(-) (rpoS) [Escherichia coli strain 203740]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715